------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file ADOHCYASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ADOHCYASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SAHH_CAEEL 437 SAHH_CATRO 485 SAHH_DICDI 430 SAHH_HUMAN 432 SAHH_LEIDO 437 SAHH_PETCR 485 SAHH_RAT 431 SAHH_RHOCA 463 SAHH_STRFR 120 SAHH_WHEAT 485 SAHH_YEAST 449 Pratt run started at Thu Feb 6 18:33:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 82.9010 18( 11) L-x(2,3)-G-R-L-x-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 2: 82.9010 11( 11) L-x(1,2)-G-R-L-x-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 3: 82.9010 12( 11) I-x(3,4)-G-R-L-x-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 4: 79.2310 11( 11) G-R-L-x-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 5: 74.0609 11( 11) R-x(0,1)-L-x(0,1)-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 6: 70.8909 11( 11) L-x-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 7: 70.3909 13( 11) L-x(0,1)-N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 8: 66.7208 11( 11) N-L-G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 9: 58.3807 11( 11) G-x(3)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 10: 58.3807 11( 11) L-x(4)-G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 11: 54.2107 11( 11) G-H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 12: 50.0406 11( 11) H-x-S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 13: 48.5406 11( 11) L-P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(5)-K-L 14: 45.8706 11( 11) S-F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 15: 44.3706 11( 11) P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(5)-K-L 16: 44.3706 16( 11) V-x(0,2)-L-x(0,1)-P-K-x-L-D-E-x-V-A-x(2)-H-L 17: 41.7005 11( 11) F-V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L 18: 40.2005 11( 11) K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(5)-K-L 19: 39.7005 16( 11) V-x(0,2)-L-P-K-x-L-D-E-x-V-A-x(1,3)-L 20: 37.5305 11( 11) V-M-S-x-S-F-x(2)-Q-x(2)-A-Q-x(2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 118.1126 18( 11) L-x(2,3)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] B 2: 118.1126 11( 11) L-x(1,2)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] C 3: 118.1126 12( 11) I-x(3,4)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] D 4: 117.3729 16( 11) V-x(0,2)-L-x(0,1)-P-K-x-L-D-E-x-V-A-x(2)-H-L-x(2)-[ILV]-[GN]-[AV]-[KR]-L-T-x-L-x(3)-Q-[AS]-[DEQS]-Y-[IL]-[GNS]-x-[EPST]-x-[ADEN]-G-P-[FY]-K-x(3)-Y-R E 5: 116.1199 16( 11) V-x(0,2)-L-P-K-x-L-D-E-x-V-A-x(1,3)-L-x(2)-[AGILV]-[GN]-[AV]-[KR]-L-T-x-L-x(3)-Q-[AS]-[DEQS]-Y-[IL]-[GNS]-x-[EPST]-x-[ADEN]-G-P-[FY]-K-x(3)-Y-R-Y F 6: 114.4426 11( 11) G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] G 7: 106.4353 11( 11) R-x(0,1)-L-x(0,1)-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] H 8: 106.1025 11( 11) L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] I 9: 102.7652 13( 11) L-x(0,1)-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] J 10: 99.0952 11( 11) N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] K 11: 94.9251 11( 11) L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] L 12: 90.7551 11( 11) G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] M 13: 80.2384 11( 11) G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] N 14: 76.0684 11( 11) H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] O 15: 68.7104 11( 11) S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] P 16: 64.5404 11( 11) F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Q 17: 60.3703 11( 11) V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] R 18: 57.4930 11( 11) L-P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] S 19: 53.3229 11( 11) P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] T 20: 49.1529 11( 11) K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 118.1126 18( 11) L-x(2,3)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 18(11) SAHH_CAEEL : 340- 375: grhvi LlaeGRLVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CAEEL : 341- 375: rhvil Lae-GRLVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 390- 424: sgiiv Lae-GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 336- 371: gvhii LlaeGRLVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_DICDI : 337- 371: vhiil Lae-GRLVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 338- 373: grrii LlaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_HUMAN : 339- 373: rriil Lae-GRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 337- 372: grhii LlakGRLVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_LEIDO : 338- 372: rhiil Lak-GRLVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 390- 424: rgiii Lae-GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 337- 372: ghrii LlaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RAT : 338- 372: hriil Lae-GRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 369- 404: garii LlseGRLLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_RHOCA : 370- 404: ariil Lse-GRLLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 27- 61: kkiiv Lse-GRLLNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 390- 424: tgiiv Lae-GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 341- 376: grhvi LlanGRLVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk SAHH_YEAST : 342- 376: rhvil Lan-GRLVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk B 2: 118.1126 11( 11) L-x(1,2)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 341- 375: rhvil LaeGRLVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 390- 424: sgiiv LaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 337- 371: vhiil LaeGRLVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 339- 373: rriil LaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 338- 372: rhiil LakGRLVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 390- 424: rgiii LaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 338- 372: hriil LaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 370- 404: ariil LseGRLLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 27- 61: kkiiv LseGRLLNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 390- 424: tgiiv LaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 342- 376: rhvil LanGRLVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk C 3: 118.1126 12( 11) I-x(3,4)-G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 12(11) SAHH_CAEEL : 339- 375: ngrhv IllaeGRLVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 388- 424: tnsgi IvlaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 335- 371: ngvhi IllaeGRLVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 337- 373: ngrri IllaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 336- 372: ngrhi IllakGRLVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 388- 424: tgrgi IilaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_PETCR : 389- 424: grgii Ilae-GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 336- 372: nghri IllaeGRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 368- 404: sgari IllseGRLLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 25- 61: dgkki IvlseGRLLNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 388- 424: tktgi IvlaeGRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 340- 376: sgrhv IllanGRLVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk D 4: 117.3729 16( 11) V-x(0,2)-L-x(0,1)-P-K-x-L-D-E-x-V-A-x(2)-H-L-x(2)-[ILV]-[GN]-[AV]-[KR]-L-T-x-L-x(3)-Q-[AS]-[DEQS]-Y-[IL]-[GNS]-x-[EPST]-x-[ADEN]-G-P-[FY]-K-x(3)-Y-R Occurences: 16(11) SAHH_CAEEL : 390- 436: klgly V--L-PKtLDEeVAylHLaqLGVKLTkLsdeQASYLGvPvAGPYKpdhYR y SAHH_CATRO : 436- 484: kyekk VyvL-PKhLDEkVAalHLgkLGAKLTkLtkdQADYISvPiEGPYKpahYR y SAHH_CATRO : 438- 484: ekkvy V--L-PKhLDEkVAalHLgkLGAKLTkLtkdQADYISvPiEGPYKpahYR y SAHH_DICDI : 381- 429: eyplg VhlL-PKiLDEeVArlHLdqLGAKLTtLtekQSEYLSvPvAGPYKvdhYR y SAHH_DICDI : 381- 429: eyplg Vh-LlPKiLDEeVArlHLdqLGAKLTtLtekQSEYLSvPvAGPYKvdhYR y SAHH_HUMAN : 383- 431: kypvg VhfL-PKkLDEaVAeaHLgkLNVKLTkLtekQAQYLGmScDGPFKpdhYR y SAHH_LEIDO : 388- 436: gdkag VffL-PKaLDEkVAalHLahVGAKLTkLtpkQAEYINcPvNGPFKpdhYR y SAHH_PETCR : 436- 484: kyekk VyvL-PKhLDEkVAalHLgkLGAKLTkLskdQADYISvPvEGPYKpahYR y SAHH_PETCR : 438- 484: ekkvy V--L-PKhLDEkVAalHLgkLGAKLTkLskdQADYISvPvEGPYKpahYR y SAHH_RAT : 382- 430: kypvg VhfL-PKkLDEaVAeaHLgkLNVKLTkLtekQAQYLGmPiNGPFKpdhYR y SAHH_RHOCA : 414- 462: eyqpg VyiL-PKsLDEkVArlHLkkIGVKLTtLrpdQAEYIGvTvEGPFKsdhYR y SAHH_STRFR : 71- 119: qyptd VyvL-PKhLDEkVArlHLdaLGVKLTtLrpeQAEYIGvEvEGPYKpdhYR y SAHH_STRFR : 73- 119: ptdvy V--L-PKhLDEkVArlHLdaLGVKLTtLrpeQAEYIGvEvEGPYKpdhYR y SAHH_WHEAT : 436- 484: kyekk VyvL-PKhLDEkVAalHLgkLGARLTkLtksQSDYISiPiEGPYKlrlYR y SAHH_WHEAT : 438- 484: ekkvy V--L-PKhLDEkVAalHLgkLGARLTkLtksQSDYISiPiEGPYKlrlYR y SAHH_YEAST : 400- 448: pfevg VhvL-PKiLDEaVAkfHLgnLGVRLTkLskvQSEYLGiPeEGPFKadhYR y SAHH_YEAST : 402- 448: evgvh V--L-PKiLDEaVAkfHLgnLGVRLTkLskvQSEYLGiPeEGPFKadhYR y E 5: 116.1199 16( 11) V-x(0,2)-L-P-K-x-L-D-E-x-V-A-x(1,3)-L-x(2)-[AGILV]-[GN]-[AV]-[KR]-L-T-x-L-x(3)-Q-[AS]-[DEQS]-Y-[IL]-[GNS]-x-[EPST]-x-[ADEN]-G-P-[FY]-K-x(3)-Y-R-Y Occurences: 16(11) SAHH_CAEEL : 390- 437: klgly V--LPKtLDEeVAylhLaqLGVKLTkLsdeQASYLGvPvAGPYKpdhYRY SAHH_CATRO : 436- 485: kyekk VyvLPKhLDEkVAalhLgkLGAKLTkLtkdQADYISvPiEGPYKpahYRY SAHH_CATRO : 438- 485: ekkvy V--LPKhLDEkVAalhLgkLGAKLTkLtkdQADYISvPiEGPYKpahYRY SAHH_DICDI : 381- 430: eyplg VhlLPKiLDEeVArlhLdqLGAKLTtLtekQSEYLSvPvAGPYKvdhYRY SAHH_HUMAN : 383- 432: kypvg VhfLPKkLDEaVAeahLgkLNVKLTkLtekQAQYLGmScDGPFKpdhYRY SAHH_LEIDO : 388- 437: gdkag VffLPKaLDEkVAalhLahVGAKLTkLtpkQAEYINcPvNGPFKpdhYRY SAHH_PETCR : 436- 485: kyekk VyvLPKhLDEkVAalhLgkLGAKLTkLskdQADYISvPvEGPYKpahYRY SAHH_PETCR : 438- 485: ekkvy V--LPKhLDEkVAalhLgkLGAKLTkLskdQADYISvPvEGPYKpahYRY SAHH_RAT : 382- 431: kypvg VhfLPKkLDEaVAeahLgkLNVKLTkLtekQAQYLGmPiNGPFKpdhYRY SAHH_RHOCA : 414- 463: eyqpg VyiLPKsLDEkVArlhLkkIGVKLTtLrpdQAEYIGvTvEGPFKsdhYRY SAHH_STRFR : 71- 120: qyptd VyvLPKhLDEkVArlhLdaLGVKLTtLrpeQAEYIGvEvEGPYKpdhYRY SAHH_STRFR : 73- 120: ptdvy V--LPKhLDEkVArlhLdaLGVKLTtLrpeQAEYIGvEvEGPYKpdhYRY SAHH_WHEAT : 436- 485: kyekk VyvLPKhLDEkVAalhLgkLGARLTkLtksQSDYISiPiEGPYKlrlYRY SAHH_WHEAT : 438- 485: ekkvy V--LPKhLDEkVAalhLgkLGARLTkLtksQSDYISiPiEGPYKlrlYRY SAHH_YEAST : 400- 449: pfevg VhvLPKiLDEaVAkfhLgnLGVRLTkLskvQSEYLGiPeEGPFKadhYRY SAHH_YEAST : 402- 449: evgvh V--LPKiLDEaVAkfhLgnLGVRLTkLskvQSEYLGiPeEGPFKadhYRY F 6: 114.4426 11( 11) G-R-L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 344- 375: illae GRLVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 393- 424: ivlae GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 340- 371: illae GRLVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 342- 373: illae GRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 341- 372: illak GRLVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 393- 424: iilae GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 341- 372: illae GRLVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 373- 404: illse GRLLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 30- 61: ivlse GRLLNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 393- 424: ivlae GRLMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 345- 376: illan GRLVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk G 7: 106.4353 11( 11) R-x(0,1)-L-x(0,1)-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 345- 375: llaeg R-LvNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 394- 424: vlaeg R-LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 341- 371: llaeg R-LvNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 343- 373: llaeg R-LvNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 342- 372: llakg R-LvNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 394- 424: ilaeg R-LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 342- 372: llaeg R-LvNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 374- 404: llseg RlL-NLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_RHOCA : 374- 404: llseg R-LlNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 31- 61: vlseg RlL-NLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_STRFR : 31- 61: vlseg R-LlNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 394- 424: vlaeg R-LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 346- 376: llang R-LvNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk H 8: 106.1025 11( 11) L-[LMV]-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 346- 375: laegr LVNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 395- 424: laegr LMNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 342- 371: laegr LVNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 344- 373: laegr LVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 343- 372: lakgr LVNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 395- 424: laegr LMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 343- 372: laegr LVNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 375- 404: lsegr LLNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 32- 61: lsegr LLNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 395- 424: laegr LMNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 347- 376: langr LVNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk I 9: 102.7652 13( 11) L-x(0,1)-N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 13(11) SAHH_CAEEL : 346- 375: laegr LvNLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 395- 424: laegr LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 342- 371: laegr LvNLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 344- 373: laegr LvNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 343- 372: lakgr LvNLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 395- 424: laegr LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 343- 372: laegr LvNLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 375- 404: lsegr LlNLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_RHOCA : 376- 404: segrl L-NLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 32- 61: lsegr LlNLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_STRFR : 33- 61: segrl L-NLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 395- 424: laegr LmNLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 347- 376: langr LvNLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk J 10: 99.0952 11( 11) N-L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 348- 375: egrlv NLGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 397- 424: egrlm NLGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 344- 371: egrlv NLGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 346- 373: egrlv NLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 345- 372: kgrlv NLGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 397- 424: egrlm NLGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 345- 372: egrlv NLGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 377- 404: egrll NLGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 34- 61: egrll NLGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 397- 424: egrlm NLGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 349- 376: ngrlv NLGCAtGHSSFVMSCSFSNQVLAQIALF ksndk K 11: 94.9251 11( 11) L-G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 349- 375: grlvn LGCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 398- 424: grlmn LGCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 345- 371: grlvn LGCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 347- 373: grlvn LGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 346- 372: grlvn LGCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 398- 424: grlmn LGCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 346- 372: grlvn LGCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 378- 404: grlln LGNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 35- 61: grlln LGNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 398- 424: grlmn LGCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 350- 376: grlvn LGCAtGHSSFVMSCSFSNQVLAQIALF ksndk L 12: 90.7551 11( 11) G-[CN]-[AG]-x-G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 350- 375: rlvnl GCAtGHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 399- 424: rlmnl GCAtGHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 346- 371: rlvnl GCGtGHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 348- 373: rlvnl GCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 347- 372: rlvnl GCAsGHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 399- 424: rlmnl GCAtGHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 347- 372: rlvnl GCAmGHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 379- 404: rllnl GNAtGHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 36- 61: rllnl GNAtGHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 399- 424: rlmnl GCAtGHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 351- 376: rlvnl GCAtGHSSFVMSCSFSNQVLAQIALF ksndk M 13: 80.2384 11( 11) G-H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 354- 375: lgcat GHPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 403- 424: lgcat GHPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 350- 371: lgcgt GHPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 352- 373: lgcam GHPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 351- 372: lgcas GHPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 403- 424: lgcat GHPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 351- 372: lgcam GHPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 383- 404: lgnat GHPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 40- 61: lgnat GHPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 403- 424: lgcat GHPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 355- 376: lgcat GHSSFVMSCSFSNQVLAQIALF ksndk N 14: 76.0684 11( 11) H-[PS]-S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 355- 375: gcatg HPSFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 404- 424: gcatg HPSFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 351- 371: gcgtg HPSFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 353- 373: gcamg HPSFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 352- 372: gcasg HPSFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 404- 424: gcatg HPSFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 352- 372: gcamg HPSFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 384- 404: gnatg HPSFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 41- 61: gnatg HPSFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 404- 424: gcatg HPSFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 356- 376: gcatg HSSFVMSCSFSNQVLAQIALF ksndk O 15: 68.7104 11( 11) S-F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 357- 375: atghp SFVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 406- 424: atghp SFVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 353- 371: gtghp SFVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 355- 373: amghp SFVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 354- 372: asghp SFVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 406- 424: atghp SFVMSCSFTNQVIAQLELW nekss SAHH_RAT : 354- 372: amghp SFVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 386- 404: atghp SFVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 43- 61: atghp SFVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 406- 424: atghp SFVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 358- 376: atghs SFVMSCSFSNQVLAQIALF ksndk P 16: 64.5404 11( 11) F-V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 358- 375: tghps FVMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 407- 424: tghps FVMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 354- 371: tghps FVMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 356- 373: mghps FVMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 355- 372: sghps FVMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 407- 424: tghps FVMSCSFTNQVIAQLELW nekss SAHH_RAT : 355- 372: mghps FVMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 387- 404: tghps FVMSASFTNQVLAQIELW tkgae SAHH_STRFR : 44- 61: tghps FVMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 407- 424: tghps FVMSCSFTNQVIAQLELW nekas SAHH_YEAST : 359- 376: tghss FVMSCSFSNQVLAQIALF ksndk Q 17: 60.3703 11( 11) V-M-S-[ACN]-S-F-[ACST]-[DN]-Q-[TV]-[ILM]-A-Q-[ILV]-[AE]-L-[FWY] Occurences: 11(11) SAHH_CAEEL : 359- 375: ghpsf VMSNSFTNQVLAQVELW tkfgt SAHH_CATRO : 408- 424: ghpsf VMSCSFTNQVIAQLELW nerkt SAHH_DICDI : 355- 371: ghpsf VMSNSFCNQTLAQIALW tktee SAHH_HUMAN : 357- 373: ghpsf VMSNSFTNQVMAQIELW thpdk SAHH_LEIDO : 356- 372: ghpsf VMSNSFTNQVLAQIELW snrdn SAHH_PETCR : 408- 424: ghpsf VMSCSFTNQVIAQLELW nekss SAHH_RAT : 356- 372: ghpsf VMSNSFTNQVMAQIELW thpdk SAHH_RHOCA : 388- 404: ghpsf VMSASFTNQVLAQIELW tkgae SAHH_STRFR : 45- 61: ghpsf VMSNSFADQTLAQIELY tkpeq SAHH_WHEAT : 408- 424: ghpsf VMSCSFTNQVIAQLELW nekas SAHH_YEAST : 360- 376: ghssf VMSCSFSNQVLAQIALF ksndk R 18: 57.4930 11( 11) L-P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] Occurences: 11(11) SAHH_CAEEL : 391- 412: lglyv LPKtLDEeVAy--Lh-LaqlGVKLT klsde SAHH_CAEEL : 391- 415: lglyv LPKtLDEeVAylhLaqLgvkLTKLS deqas SAHH_CATRO : 439- 460: kkvyv LPKhLDEkVAa--Lh-LgklGAKLT kltkd SAHH_CATRO : 439- 463: kkvyv LPKhLDEkVAalhLgkLgakLTKLT kdqad SAHH_DICDI : 384- 405: lgvhl LPKiLDEeVAr--Lh-LdqlGAKLT tltek SAHH_HUMAN : 386- 410: vgvhf LPKkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_LEIDO : 391- 412: agvff LPKaLDEkVAa--Lh-LahvGAKLT kltpk SAHH_PETCR : 439- 460: kkvyv LPKhLDEkVAa--Lh-LgklGAKLT klskd SAHH_PETCR : 439- 463: kkvyv LPKhLDEkVAalhLgkLgakLTKLS kdqad SAHH_RAT : 385- 409: vgvhf LPKkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_RHOCA : 417- 438: pgvyi LPKsLDEkVAr--Lh-LkkiGVKLT tlrpd SAHH_STRFR : 74- 95: tdvyv LPKhLDEkVAr--Lh-LdalGVKLT tlrpe SAHH_WHEAT : 439- 463: kkvyv LPKhLDEkVAalhLgkLgarLTKLT ksqsd SAHH_YEAST : 403- 427: vgvhv LPKiLDEaVAkfhLgnLgvrLTKLS kvqse S 19: 53.3229 11( 11) P-K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] Occurences: 11(11) SAHH_CAEEL : 392- 412: glyvl PKtLDEeVAy--Lh-LaqlGVKLT klsde SAHH_CAEEL : 392- 415: glyvl PKtLDEeVAylhLaqLgvkLTKLS deqas SAHH_CATRO : 440- 460: kvyvl PKhLDEkVAa--Lh-LgklGAKLT kltkd SAHH_CATRO : 440- 463: kvyvl PKhLDEkVAalhLgkLgakLTKLT kdqad SAHH_DICDI : 385- 405: gvhll PKiLDEeVAr--Lh-LdqlGAKLT tltek SAHH_HUMAN : 387- 410: gvhfl PKkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_LEIDO : 392- 412: gvffl PKaLDEkVAa--Lh-LahvGAKLT kltpk SAHH_PETCR : 440- 460: kvyvl PKhLDEkVAa--Lh-LgklGAKLT klskd SAHH_PETCR : 440- 463: kvyvl PKhLDEkVAalhLgkLgakLTKLS kdqad SAHH_RAT : 386- 409: gvhfl PKkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_RHOCA : 418- 438: gvyil PKsLDEkVAr--Lh-LkkiGVKLT tlrpd SAHH_STRFR : 75- 95: dvyvl PKhLDEkVAr--Lh-LdalGVKLT tlrpe SAHH_WHEAT : 440- 463: kvyvl PKhLDEkVAalhLgkLgarLTKLT ksqsd SAHH_YEAST : 404- 427: gvhvl PKiLDEaVAkfhLgnLgvrLTKLS kvqse T 20: 49.1529 11( 11) K-x-L-D-E-x-V-A-x(1,3)-L-x(1,2)-L-x(3)-[GL]-[ATV]-K-L-[ST] Occurences: 11(11) SAHH_CAEEL : 393- 412: lyvlp KtLDEeVAy--Lh-LaqlGVKLT klsde SAHH_CAEEL : 393- 415: lyvlp KtLDEeVAylhLaqLgvkLTKLS deqas SAHH_CATRO : 441- 460: vyvlp KhLDEkVAa--Lh-LgklGAKLT kltkd SAHH_CATRO : 441- 463: vyvlp KhLDEkVAalhLgkLgakLTKLT kdqad SAHH_DICDI : 386- 405: vhllp KiLDEeVAr--Lh-LdqlGAKLT tltek SAHH_HUMAN : 388- 410: vhflp KkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_LEIDO : 393- 412: vfflp KaLDEkVAa--Lh-LahvGAKLT kltpk SAHH_PETCR : 441- 460: vyvlp KhLDEkVAa--Lh-LgklGAKLT klskd SAHH_PETCR : 441- 463: vyvlp KhLDEkVAalhLgkLgakLTKLS kdqad SAHH_RAT : 387- 409: vhflp KkLDEaVAeahLgkLnvkLTKLT ekqaq SAHH_RHOCA : 419- 438: vyilp KsLDEkVAr--Lh-LkkiGVKLT tlrpd SAHH_STRFR : 76- 95: vyvlp KhLDEkVAr--Lh-LdalGVKLT tlrpe SAHH_WHEAT : 441- 463: vyvlp KhLDEkVAalhLgkLgarLTKLT ksqsd SAHH_YEAST : 405- 427: vhvlp KiLDEaVAkfhLgnLgvrLTKLS kvqse Number of patterns evaluated by Pratt:10370 Total running time: 7 seconds