------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file ADH_IRON_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ADH_IRON_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: 4HDB_CLOKL 371 ADH1_CLOAB 388 ADH2_ZYMMO 382 ADH4_YEAST 382 ADHA_CLOAB 389 ADHB_CLOAB 390 ADHE_CLOAB 862 ADHE_ECOLI 890 ADHF_SCHPO 422 DHAT_CITFR 387 EUTG_SALTY 391 FUCO_ECOLI 383 GLDA_BACST 370 GLDA_CITFR 365 GLDA_ECOLI 380 MEDH_BACMT 380 YIAY_ECOLI 383 Pratt run started at Thu Feb 6 18:32:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 17( 17) G-G-x(2,3)-D-x(2)-K 2: 16.1802 18( 17) G-x-G-x(3)-D-x(2,3)-K 3: 15.6802 21( 17) G-x(1,3)-G-x(3)-D-x(2)-K 4: 15.1802 21( 17) G-x(1,3)-G-x(3,4)-D-x(2)-K 5: 12.5102 22( 17) G-x(3)-D-x(2)-K 6: 12.0102 25( 17) G-x(3)-D-x(2,3)-K 7: 12.0102 24( 17) G-G-x(0,1)-G 8: 11.5102 35( 17) A-x(1,2)-L-x(0,1)-L 9: 11.5102 56( 17) A-x(0,1)-L-x(1,2)-A 10: 11.5102 48( 17) A-x(3)-A-x(1,3)-L 11: 11.5102 47( 17) A-x(3,4)-A-x(2,3)-G 12: 11.5102 46( 17) A-x(2,3)-A-x(2,3)-G 13: 11.5102 57( 17) A-x(2,3)-L-x(0,1)-A 14: 11.5102 36( 17) V-x(2,3)-A-x(1,2)-L 15: 11.5102 31( 17) V-x(2,3)-A-x(0,1)-L 16: 11.5102 42( 17) A-x(2,3)-A-x(1,2)-G 17: 11.5102 50( 17) A-x(3,4)-A-x(1,2)-G 18: 11.5102 62( 17) A-x(1,2)-A-x(4,5)-A 19: 11.5102 70( 17) A-x(1,2)-A-x(3,4)-A 20: 11.5102 81( 17) A-x(3,4)-A-x(2,3)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 18.4225 17( 17) G-G-x(2,3)-D-x(2)-K-[AGIV] B 2: 17.9225 20( 17) G-x(1,3)-G-x(3)-D-x(2)-K-[AGIV] C 3: 17.4225 20( 17) G-x(1,3)-G-x(3,4)-D-x(2)-K-[AGIV] D 4: 16.4723 18( 17) G-G-x(0,1)-G-x-[APTV]-x-[CDGS] E 5: 16.1802 18( 17) G-x-G-x(3)-D-x(2,3)-K F 6: 14.7525 17( 17) G-x(3)-D-x-[AGIV]-K G 7: 14.7525 19( 17) G-x(3)-D-x(2)-K-[AGIV] H 8: 14.2525 20( 17) G-x(3)-D-x(2,3)-K-[AGIV] I 9: 13.7421 47( 17) A-x(3,4)-A-x(2,3)-A-x-[AENS] J 10: 13.4189 25( 17) A-x(2,3)-A-x(2,3)-G-[AGILV] K 11: 13.4074 30( 17) A-x(1,2)-A-x(4,5)-A-x-[ANPST] L 12: 12.0102 17( 17) G-G-x(2,3)-D M 13: 11.5102 35( 17) A-x(1,2)-L-x(0,1)-L N 14: 11.5102 56( 17) A-x(0,1)-L-x(1,2)-A O 15: 11.5102 48( 17) A-x(3)-A-x(1,3)-L P 16: 11.5102 47( 17) A-x(3,4)-A-x(2,3)-G Q 17: 11.5102 57( 17) A-x(2,3)-L-x(0,1)-A R 18: 11.5102 36( 17) V-x(2,3)-A-x(1,2)-L S 19: 11.5102 31( 17) V-x(2,3)-A-x(0,1)-L T 20: 11.5102 42( 17) A-x(2,3)-A-x(1,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 18.4225 17( 17) G-G-x(2,3)-D-x(2)-K-[AGIV] Occurences: 17(17) 4HDB_CLOKL : 87- 96: iiavg GGsviDiaKI lslky ADH1_CLOAB : 92- 101: iiamg GGspiDaaKA mwify ADH2_ZYMMO : 96- 105: vislg GGsphDcaKA ialva ADH4_YEAST : 98- 107: vvsig GGsahDnaKA ialla ADHA_CLOAB : 97- 106: vlaig GGsaiDcsKV iaagv ADHB_CLOAB : 97- 106: vlaig GGsaiDcaKV iaaac ADHE_CLOAB : 783- 791: dyikl GGnt-DeeKV dllin ADHE_ECOLI : 544- 553: iialg GGspmDaaKI mwvmy ADHF_SCHPO : 140- 149: mvsig GGsahDcaKG ialla DHAT_CITFR : 101- 110: ivtvg GGsphDcgKG igiaa EUTG_SALTY : 115- 124: vvafg GGsvlDaaKA vallv FUCO_ECOLI : 97- 106: liaig GGspqDtcKA igiis GLDA_BACST : 95- 104: vigvg GGktlDtaKA vadel GLDA_CITFR : 93- 102: vvgig GGktlDtaKA igyyq GLDA_ECOLI : 106- 115: ilgig GGktlDtaKA lahfm MEDH_BACMT : 94- 103: lvsig GGsshDtaKA iglva YIAY_ECOLI : 97- 106: vislg GGsphDcaKG ialva B 2: 17.9225 20( 17) G-x(1,3)-G-x(3)-D-x(2)-K-[AGIV] Occurences: 20(17) 4HDB_CLOKL : 86- 96: riiav Gg--GsviDiaKI lslky ADH1_CLOAB : 91- 101: wiiam Gg--GspiDaaKA mwify ADH2_ZYMMO : 95- 105: fvisl Gg--GsphDcaKA ialva ADH4_YEAST : 97- 107: ivvsi Gg--GsahDnaKA ialla ADHA_CLOAB : 96- 106: lvlai Gg--GsaiDcsKV iaagv ADHB_CLOAB : 96- 106: vvlai Gg--GsaiDcaKV iaaac ADHE_CLOAB : 364- 376: nlggl GhtsGiyaDeiKA rdkid ADHE_ECOLI : 543- 553: viial Gg--GspmDaaKI mwvmy ADHF_SCHPO : 139- 149: smvsi Gg--GsahDcaKG ialla DHAT_CITFR : 100- 110: iivtv Gg--GsphDcgKG igiaa EUTG_SALTY : 114- 124: gvvaf Gg--GsvlDaaKA vallv FUCO_ECOLI : 96- 106: yliai Gg--GspqDtcKA igiis GLDA_BACST : 92- 104: aaivi GvggGktlDtaKA vadel GLDA_BACST : 94- 104: ivigv Gg--GktlDtaKA vadel GLDA_CITFR : 90- 102: crgvv GiggGktlDtaKA igyyq GLDA_CITFR : 92- 102: gvvgi Gg--GktlDtaKA igyyq GLDA_ECOLI : 103- 115: cgail GiggGktlDtaKA lahfm GLDA_ECOLI : 105- 115: ailgi Gg--GktlDtaKA lahfm MEDH_BACMT : 93- 103: alvsi Gg--GsshDtaKA iglva YIAY_ECOLI : 96- 106: svisl Gg--GsphDcaKG ialva C 3: 17.4225 20( 17) G-x(1,3)-G-x(3,4)-D-x(2)-K-[AGIV] Occurences: 20(17) 4HDB_CLOKL : 86- 96: riiav Gg--Gsvi-DiaKI lslky ADH1_CLOAB : 91- 101: wiiam Gg--Gspi-DaaKA mwify ADH2_ZYMMO : 95- 105: fvisl Gg--Gsph-DcaKA ialva ADH4_YEAST : 97- 107: ivvsi Gg--Gsah-DnaKA ialla ADHA_CLOAB : 96- 106: lvlai Gg--Gsai-DcsKV iaagv ADHB_CLOAB : 96- 106: vvlai Gg--Gsai-DcaKV iaaac ADHE_CLOAB : 364- 376: nlggl GhtsGiya-DeiKA rdkid ADHE_ECOLI : 543- 553: viial Gg--Gspm-DaaKI mwvmy ADHF_SCHPO : 139- 149: smvsi Gg--Gsah-DcaKG ialla DHAT_CITFR : 100- 110: iivtv Gg--Gsph-DcgKG igiaa EUTG_SALTY : 114- 124: gvvaf Gg--Gsvl-DaaKA vallv FUCO_ECOLI : 96- 106: yliai Gg--Gspq-DtcKA igiis GLDA_BACST : 92- 104: aaivi GvggGktl-DtaKA vadel GLDA_BACST : 92- 104: aaivi Gvg-GgktlDtaKA vadel GLDA_BACST : 94- 104: ivigv Gg--Gktl-DtaKA vadel GLDA_CITFR : 90- 102: crgvv GiggGktl-DtaKA igyyq GLDA_CITFR : 90- 102: crgvv Gig-GgktlDtaKA igyyq GLDA_CITFR : 92- 102: gvvgi Gg--Gktl-DtaKA igyyq GLDA_ECOLI : 103- 115: cgail GiggGktl-DtaKA lahfm GLDA_ECOLI : 103- 115: cgail Gig-GgktlDtaKA lahfm GLDA_ECOLI : 105- 115: ailgi Gg--Gktl-DtaKA lahfm MEDH_BACMT : 93- 103: alvsi Gg--Gssh-DtaKA iglva YIAY_ECOLI : 96- 106: svisl Gg--Gsph-DcaKG ialva D 4: 16.4723 18( 17) G-G-x(0,1)-G-x-[APTV]-x-[CDGS] Occurences: 18(17) 4HDB_CLOKL : 86- 92: riiav GG-GsViD iakil ADH1_CLOAB : 91- 97: wiiam GG-GsPiD aakam ADH2_ZYMMO : 95- 101: fvisl GG-GsPhD cakai ADH4_YEAST : 97- 103: ivvsi GG-GsAhD nakai ADHA_CLOAB : 96- 102: lvlai GG-GsAiD cskvi ADHB_CLOAB : 96- 102: vvlai GG-GsAiD cakvi ADHE_CLOAB : 361- 368: tlinl GGlGhTsG iyade ADHE_ECOLI : 362- 369: klvam GGiGhTsC lytdq ADHE_ECOLI : 543- 549: viial GG-GsPmD aakim ADHF_SCHPO : 139- 145: smvsi GG-GsAhD cakgi DHAT_CITFR : 100- 106: iivtv GG-GsPhD cgkgi EUTG_SALTY : 114- 120: gvvaf GG-GsVlD aakav FUCO_ECOLI : 96- 102: yliai GG-GsPqD tckai GLDA_BACST : 94- 100: ivigv GG-GkTlD takav GLDA_CITFR : 92- 98: gvvgi GG-GkTlD takai GLDA_ECOLI : 105- 111: ailgi GG-GkTlD takal MEDH_BACMT : 254- 261: vafnn GGlGlVhS ishqv YIAY_ECOLI : 96- 102: svisl GG-GsPhD cakgi E 5: 16.1802 18( 17) G-x-G-x(3)-D-x(2,3)-K Occurences: 18(17) 4HDB_CLOKL : 86- 95: riiav GgGsviDia-K ilslk ADH1_CLOAB : 91- 100: wiiam GgGspiDaa-K amwif ADH2_ZYMMO : 95- 104: fvisl GgGsphDca-K aialv ADH4_YEAST : 97- 106: ivvsi GgGsahDna-K aiall ADHA_CLOAB : 96- 105: lvlai GgGsaiDcs-K viaag ADHB_CLOAB : 96- 105: vvlai GgGsaiDca-K viaaa ADHE_CLOAB : 58- 68: avlet GmGlveDkviK nhfag ADHE_ECOLI : 57- 67: avaes GmGiveDkviK nhfas ADHE_ECOLI : 543- 552: viial GgGspmDaa-K imwvm ADHF_SCHPO : 139- 148: smvsi GgGsahDca-K giall DHAT_CITFR : 100- 109: iivtv GgGsphDcg-K gigia EUTG_SALTY : 114- 123: gvvaf GgGsvlDaa-K avall FUCO_ECOLI : 96- 105: yliai GgGspqDtc-K aigii GLDA_BACST : 94- 103: ivigv GgGktlDta-K avade GLDA_CITFR : 92- 101: gvvgi GgGktlDta-K aigyy GLDA_ECOLI : 105- 114: ailgi GgGktlDta-K alahf MEDH_BACMT : 93- 102: alvsi GgGsshDta-K aiglv YIAY_ECOLI : 96- 105: svisl GgGsphDca-K gialv F 6: 14.7525 17( 17) G-x(3)-D-x-[AGIV]-K Occurences: 17(17) 4HDB_CLOKL : 88- 95: iavgg GsviDiAK ilslk ADH1_CLOAB : 93- 100: iamgg GspiDaAK amwif ADH2_ZYMMO : 97- 104: islgg GsphDcAK aialv ADH4_YEAST : 99- 106: vsigg GsahDnAK aiall ADHA_CLOAB : 115- 122: gvyyd GdtwDmVK dpski ADHB_CLOAB : 98- 105: laigg GsaiDcAK viaaa ADHE_CLOAB : 368- 375: lghts GiyaDeIK ardki ADHE_ECOLI : 545- 552: ialgg GspmDaAK imwvm ADHF_SCHPO : 141- 148: vsigg GsahDcAK giall DHAT_CITFR : 102- 109: vtvgg GsphDcGK gigia EUTG_SALTY : 116- 123: vafgg GsvlDaAK avall FUCO_ECOLI : 20- 27: grgav GaltDeVK rrgyq GLDA_BACST : 96- 103: igvgg GktlDtAK avade GLDA_CITFR : 94- 101: vgigg GktlDtAK aigyy GLDA_ECOLI : 107- 114: lgigg GktlDtAK alahf MEDH_BACMT : 95- 102: vsigg GsshDtAK aiglv YIAY_ECOLI : 98- 105: islgg GsphDcAK gialv G 7: 14.7525 19( 17) G-x(3)-D-x(2)-K-[AGIV] Occurences: 19(17) 4HDB_CLOKL : 88- 96: iavgg GsviDiaKI lslky ADH1_CLOAB : 93- 101: iamgg GspiDaaKA mwify ADH2_ZYMMO : 97- 105: islgg GsphDcaKA ialva ADH4_YEAST : 99- 107: vsigg GsahDnaKA ialla ADHA_CLOAB : 98- 106: laigg GsaiDcsKV iaagv ADHB_CLOAB : 98- 106: laigg GsaiDcaKV iaaac ADHE_CLOAB : 368- 376: lghts GiyaDeiKA rdkid ADHE_CLOAB : 783- 791: dyikl GgntDeeKV dllin ADHE_ECOLI : 545- 553: ialgg GspmDaaKI mwvmy ADHF_SCHPO : 141- 149: vsigg GsahDcaKG ialla DHAT_CITFR : 102- 110: vtvgg GsphDcgKG igiaa EUTG_SALTY : 116- 124: vafgg GsvlDaaKA vallv FUCO_ECOLI : 98- 106: iaigg GspqDtcKA igiis GLDA_BACST : 96- 104: igvgg GktlDtaKA vadel GLDA_CITFR : 94- 102: vgigg GktlDtaKA igyyq GLDA_ECOLI : 107- 115: lgigg GktlDtaKA lahfm MEDH_BACMT : 95- 103: vsigg GsshDtaKA iglva YIAY_ECOLI : 46- 54: mltkl GmagDvqKA leern YIAY_ECOLI : 98- 106: islgg GsphDcaKG ialva H 8: 14.2525 20( 17) G-x(3)-D-x(2,3)-K-[AGIV] Occurences: 20(17) 4HDB_CLOKL : 88- 96: iavgg GsviDia-KI lslky ADH1_CLOAB : 93- 101: iamgg GspiDaa-KA mwify ADH2_ZYMMO : 97- 105: islgg GsphDca-KA ialva ADH4_YEAST : 99- 107: vsigg GsahDna-KA ialla ADHA_CLOAB : 98- 106: laigg GsaiDcs-KV iaagv ADHB_CLOAB : 98- 106: laigg GsaiDca-KV iaaac ADHE_CLOAB : 368- 376: lghts GiyaDei-KA rdkid ADHE_CLOAB : 783- 791: dyikl GgntDee-KV dllin ADHE_ECOLI : 545- 553: ialgg GspmDaa-KI mwvmy ADHF_SCHPO : 141- 149: vsigg GsahDca-KG ialla DHAT_CITFR : 102- 110: vtvgg GsphDcg-KG igiaa EUTG_SALTY : 116- 124: vafgg GsvlDaa-KA vallv FUCO_ECOLI : 98- 106: iaigg GspqDtc-KA igiis GLDA_BACST : 96- 104: igvgg GktlDta-KA vadel GLDA_CITFR : 94- 102: vgigg GktlDta-KA igyyq GLDA_CITFR : 313- 322: tlaem GvkdDidgKI mavak GLDA_ECOLI : 107- 115: lgigg GktlDta-KA lahfm MEDH_BACMT : 95- 103: vsigg GsshDta-KA iglva YIAY_ECOLI : 46- 54: mltkl GmagDvq-KA leern YIAY_ECOLI : 98- 106: islgg GsphDca-KG ialva I 9: 13.7421 47( 17) A-x(3,4)-A-x(2,3)-A-x-[AENS] Occurences: 47(17) 4HDB_CLOKL : 247- 256: iafgn Agvg-Avh-AlS ypigg ADH1_CLOAB : 242- 251: eqmhy Aqcl-Agm-AfS nallg ADH2_ZYMMO : 103- 112: sphdc Akai-Alv-AtN ggevk ADH2_ZYMMO : 189- 200: kglta AtgmdAlthAfE aysst ADH2_ZYMMO : 194- 203: atgmd Alth-Afe-AyS staat ADH2_ZYMMO : 215- 225: itdac Alka-AsmiAkN lktac ADH2_ZYMMO : 245- 254: eamay Aqfl-Agm-AfN naslg ADH4_YEAST : 105- 114: sahdn Akai-All-AtN ggeig ADH4_YEAST : 136- 146: alplf AinttAgt-AsE mtrft ADH4_YEAST : 247- 256: tdmcy Aeyl-Agm-AfN naslg ADHA_CLOAB : 242- 253: dyear AnlmwAsslAiN gllsl ADHB_CLOAB : 100- 110: igggs Aidc-AkviAaA ceydg ADHB_CLOAB : 242- 253: dyear AnlmwAsslAiN gllty ADHE_CLOAB : 704- 713: ekmah Astm-Agm-AsA naflg ADHE_ECOLI : 44- 54: laaad AriplAkm-AvA esgmg ADHE_ECOLI : 705- 714: ervhs Aati-Agi-AfA naflg ADHE_ECOLI : 872- 882: veget AakkeAap-AkA ekkak ADHE_ECOLI : 873- 882: egeta Akke-Aap-AkA ekkak ADHF_SCHPO : 147- 156: sahdc Akgi-All-AtN ggkia ADHF_SCHPO : 178- 188: qlpli AinttAgt-AsE mtrfa ADHF_SCHPO : 233- 244: pslta AtgmdAlthAvE ayvst ADHF_SCHPO : 396- 405: vlvdh Amkd-Acg-AtN piqpt DHAT_CITFR : 139- 149: lppiv AvnttAgt-AsE vtrhc DHAT_CITFR : 194- 205: aplta AtgmdAlthAvE ayisk DHAT_CITFR : 250- 259: enmay Asll-Agm-AfN nanlg DHAT_CITFR : 323- 332: lstmd Aael-Aih-AiA rlsad EUTG_SALTY : 63- 72: sflhq Agmt-Apl-ArS lamkg EUTG_SALTY : 212- 221: mtgid Alth-Aie-AyS altpr EUTG_SALTY : 262- 271: enmll Ascm-Agm-AfS saglg FUCO_ECOLI : 137- 147: svpil AipttAgt-AaE vtiny FUCO_ECOLI : 192- 203: palka AtgvdAlthAiE gyitr FUCO_ECOLI : 322- 331: eearn Aave-Avf-AlN rdvgi GLDA_BACST : 119- 130: vivpt AastdAptsAlS viysd GLDA_BACST : 120- 130: ivpta Astd-AptsAlS viysd GLDA_BACST : 342- 353: etihn AfnvtAddvAdA ifaad GLDA_BACST : 353- 363: ddvad Aifa-AdqyAkA ykekh GLDA_CITFR : 118- 128: vipti Astd-AptsAlS viyte GLDA_CITFR : 212- 223: ydtll AegekArfaAqA gvvtd GLDA_ECOLI : 131- 141: iapti Astd-ApcsAlS viytd MEDH_BACMT : 187- 198: aglti AtgmdAlshAiE ayvak MEDH_BACMT : 243- 252: eamay Aqym-Agv-AfN ngglg MEDH_BACMT : 315- 325: glsta AaaerAiv-AlE rynkn MEDH_BACMT : 316- 325: lstaa Aaer-Aiv-AlE rynkn YIAY_ECOLI : 104- 113: sphdc Akgi-Alv-AaN ggdir YIAY_ECOLI : 135- 145: qlpmi AinttAgt-AsE mtrfc YIAY_ECOLI : 190- 201: kslta AtgmdAlthAiE ayvsi YIAY_ECOLI : 246- 255: eamay Aqfl-Agm-AfN naslg J 10: 13.4189 25( 17) A-x(2,3)-A-x(2,3)-G-[AGILV] Occurences: 25(17) 4HDB_CLOKL : 243- 251: nyagi AfgnAgv-GA vhals ADH1_CLOAB : 249- 257: clagm AfsnAll-GI chsma ADH2_ZYMMO : 107- 114: cakai Alv-Atn-GG evkdy ADH4_YEAST : 109- 116: nakai All-Atn-GG eigdy ADH4_YEAST : 187- 194: fglpp Alt-Aat-GL dalth ADHA_CLOAB : 247- 255: anlmw AsslAin-GL lslgk ADHB_CLOAB : 247- 255: anlmw AsslAin-GL ltygk ADHE_CLOAB : 299- 308: ivgqs AytiAamaGI kvpkt ADHE_CLOAB : 711- 719: tmagm AsanAfl-GL chsma ADHE_ECOLI : 712- 720: tiagi AfanAfl-GV chsma ADHE_ECOLI : 775- 783: arrry Aei-AdhlGL sapgd ADHF_SCHPO : 151- 158: cakgi All-Atn-GG kiady DHAT_CITFR : 332- 340: aihai ArlsAdi-GI pqhlr EUTG_SALTY : 70- 78: mtapl ArslAmk-GV amtvw EUTG_SALTY : 269- 277: cmagm AfssAgl-GL chama FUCO_ECOLI : 188- 195: dgmpp Alk-Aat-GV dalth GLDA_BACST : 85- 93: niark Aea-AiviGV gggkt GLDA_CITFR : 217- 225: aegek ArfaAqa-GV vtdal GLDA_CITFR : 217- 225: aegek Arf-AaqaGV vtdal GLDA_ECOLI : 93- 100: rlrgi Aet-Aqc-GA ilgig GLDA_ECOLI : 96- 104: giaet AqcgAil-GI gggkt GLDA_ECOLI : 113- 122: ktldt AkalAhfmGV pvaia GLDA_ECOLI : 264- 273: esggl AaahAvhnGL taipd GLDA_ECOLI : 265- 273: sggla Aah-AvhnGL taipd MEDH_BACMT : 247- 255: yaqym Agv-AfnnGG lglvh YIAY_ECOLI : 108- 115: cakgi Alv-Aan-GG dirdy K 11: 13.4074 30( 17) A-x(1,2)-A-x(4,5)-A-x-[ANPST] Occurences: 30(17) 4HDB_CLOKL : 187- 198: dalih AteAyvspnAnP ytdmf ADH1_CLOAB : 297- 308: slery AkiAkqislAgN tneel ADH2_ZYMMO : 103- 112: sphdc Ak-Aialv-AtN ggevk ADH2_ZYMMO : 198- 208: dalth AfeAysst-AaT pitda ADH2_ZYMMO : 198- 209: dalth AfeAysstaAtP itdac ADH2_ZYMMO : 215- 225: itdac AlkAasmi-AkN lktac ADH2_ZYMMO : 353- 364: dvpll AdhAlkdacAlT nprqg ADH4_YEAST : 105- 114: sahdn Ak-Aiall-AtN ggeig ADH4_YEAST : 187- 198: fglpp AltAatgldAlT hciea ADHA_CLOAB : 240- 249: tddye Ar-Anlmw-AsS laing ADHB_CLOAB : 240- 249: pddye Ar-Anlmw-AsS laing ADHE_CLOAB : 42- 52: naama AidAriel-AkA avlet ADHE_ECOLI : 706- 716: rvhsa AtiAgiaf-AnA flgvc ADHF_SCHPO : 242- 252: dalth AveAyvst-AaN pitda ADHF_SCHPO : 242- 253: dalth AveAyvstaAnP itdac DHAT_CITFR : 203- 214: dalth AveAyiskdAnP vtdaa DHAT_CITFR : 220- 230: vtdaa AiqAirli-ArN lrqav DHAT_CITFR : 358- 369: dfpym AemAlkdgnAfS nprkg EUTG_SALTY : 36- 46: lcglg AlgAcgqe-AqA rgvsh FUCO_ECOLI : 188- 199: dgmpp AlkAatgvdAlT haieg GLDA_BACST : 174- 183: sgiad Al-Atwve-ArS viksg GLDA_BACST : 353- 363: ddvad AifAadqy-AkA ykekh GLDA_CITFR : 179- 189: stwfe Ak-AcydarAtS maggq GLDA_ECOLI : 185- 194: agigd Al-Atwfe-ArA csrsg GLDA_ECOLI : 192- 202: atwfe Ar-AcsrsgAtT maggk MEDH_BACMT : 101- 110: sshdt Ak-Aiglv-AaN ggrin MEDH_BACMT : 196- 207: dalsh AieAyvakgAtP vtdaf MEDH_BACMT : 202- 213: ieayv AkgAtpvtdAfA iqamk YIAY_ECOLI : 199- 209: dalth AieAyvsi-AaT pitda YIAY_ECOLI : 199- 210: dalth AieAyvsiaAtP itdac YIAY_ECOLI : 216- 226: itdac AlkAvtmi-AeN lplav YIAY_ECOLI : 237- 246: edgsn Ak-Aream-AyA qflag YIAY_ECOLI : 296- 306: fnskv Aa-ArlrdcAaA mgvnv L 12: 12.0102 17( 17) G-G-x(2,3)-D Occurences: 17(17) 4HDB_CLOKL : 87- 92: iiavg GGsviD iakil ADH1_CLOAB : 92- 97: iiamg GGspiD aakam ADH2_ZYMMO : 96- 101: vislg GGsphD cakai ADH4_YEAST : 98- 103: vvsig GGsahD nakai ADHA_CLOAB : 97- 102: vlaig GGsaiD cskvi ADHB_CLOAB : 97- 102: vlaig GGsaiD cakvi ADHE_CLOAB : 783- 787: dyikl GGnt-D eekvd ADHE_ECOLI : 544- 549: iialg GGspmD aakim ADHF_SCHPO : 140- 145: mvsig GGsahD cakgi DHAT_CITFR : 101- 106: ivtvg GGsphD cgkgi EUTG_SALTY : 115- 120: vvafg GGsvlD aakav FUCO_ECOLI : 97- 102: liaig GGspqD tckai GLDA_BACST : 95- 100: vigvg GGktlD takav GLDA_CITFR : 93- 98: vvgig GGktlD takai GLDA_ECOLI : 106- 111: ilgig GGktlD takal MEDH_BACMT : 94- 99: lvsig GGsshD takai YIAY_ECOLI : 97- 102: vislg GGsphD cakgi M 13: 11.5102 35( 17) A-x(1,2)-L-x(0,1)-L Occurences: 35(17) 4HDB_CLOKL : 94- 99: svidi AkiLsL kytdd 4HDB_CLOKL : 207- 212: mfsvk AmeLiL ngymq ADH1_CLOAB : 28- 32: lkgkk Am-LvL gggsm ADH2_ZYMMO : 51- 54: vvkqv Ad-L-L kaqgi ADH2_ZYMMO : 281- 284: hgvcn Av-L-L phvla ADH4_YEAST : 107- 111: hdnak AiaL-L atngg ADH4_YEAST : 130- 134: nqskk Aa-LpL faint ADH4_YEAST : 283- 286: hgvcn Av-L-L phvqe ADHA_CLOAB : 134- 139: kvlpi AsiLtL satgs ADHB_CLOAB : 217- 221: lqdrm AeaL-L rtcik ADHE_CLOAB : 715- 719: masan Af-LgL chsma ADHE_CLOAB : 738- 742: ipsgi AnaL-L ieevi ADHE_ECOLI : 413- 418: ynfkl ApsLtL gcgsw ADHE_ECOLI : 677- 681: gqalq AlkL-L keylp ADHE_ECOLI : 739- 743: iphgl AnaL-L icnvi ADHE_ECOLI : 778- 783: ryaei AdhLgL sapgd ADHF_SCHPO : 325- 328: hgvcn Av-L-L ahvqk DHAT_CITFR : 250- 253: enmay As-L-L agmaf DHAT_CITFR : 286- 289: hgvan Av-L-L phvar EUTG_SALTY : 124- 128: ldaak AvaL-L vtnpd EUTG_SALTY : 273- 277: mafss Ag-LgL chama EUTG_SALTY : 298- 301: hgqan Am-L-L ptvmg FUCO_ECOLI : 282- 285: hgvan Ai-L-L phvmr GLDA_BACST : 238- 242: eavve AntL-L sglgf GLDA_CITFR : 198- 202: gqstv Aa-LsL arlcy GLDA_CITFR : 281- 285: afgtl Aq-LvL qnspm GLDA_CITFR : 355- 358: aailt Ad-L-L gqqwl GLDA_ECOLI : 175- 178: vagap Ar-L-L aagig GLDA_ECOLI : 211- 215: gkctq Aa-LaL aelcy GLDA_ECOLI : 363- 366: pdqvy Aa-L-L vadqy MEDH_BACMT : 301- 304: rfahi Ae-L-L genvs YIAY_ECOLI : 78- 83: ttenv AagLkL lkenn YIAY_ECOLI : 79- 83: tenva Ag-LkL lkenn YIAY_ECOLI : 224- 229: avtmi AenLpL avedg YIAY_ECOLI : 282- 285: hgvcn Av-L-L phvqv N 14: 11.5102 56( 17) A-x(0,1)-L-x(1,2)-A Occurences: 56(17) 4HDB_CLOKL : 183- 187: tssvd A-LihA teayv ADH1_CLOAB : 193- 197: htgmd A-LthA ieayv ADH2_ZYMMO : 51- 56: vvkqv AdLlkA qgins ADH2_ZYMMO : 107- 110: cakai A-Lv-A tngge ADH2_ZYMMO : 194- 198: atgmd A-LthA feays ADH2_ZYMMO : 215- 218: itdac A-Lk-A asmia ADH2_ZYMMO : 215- 219: itdac A-LkaA smiak ADH2_ZYMMO : 356- 360: lladh A-LkdA caltn ADH4_YEAST : 109- 112: nakai A-Ll-A tngge ADH4_YEAST : 187- 190: fglpp A-Lt-A atgld ADH4_YEAST : 187- 191: fglpp A-LtaA tglda ADHA_CLOAB : 242- 247: dyear AnLmwA sslai ADHB_CLOAB : 242- 247: dyear AnLmwA sslai ADHE_CLOAB : 350- 354: dnfdd A-LkkA vtlin ADHE_CLOAB : 588- 592: klgkk AmLv-A ittsa ADHE_CLOAB : 673- 676: ytngl A-Le-A irlif ADHE_ECOLI : 6- 10: avtnv AeLn-A lverv ADHE_ECOLI : 37- 41: kifra AaLa-A adari ADHE_ECOLI : 37- 42: kifra AaLaaA darip ADHE_ECOLI : 38- 41: ifraa A-La-A adari ADHE_ECOLI : 38- 42: ifraa A-LaaA darip ADHE_ECOLI : 290- 293: ilkng A-Ln-A aivgq ADHE_ECOLI : 290- 294: ilkng A-LnaA ivgqp ADHE_ECOLI : 674- 677: fsdgq A-Lq-A lkllk ADHF_SCHPO : 151- 154: cakgi A-Ll-A tnggk ADHF_SCHPO : 238- 242: atgmd A-LthA veayv ADHF_SCHPO : 325- 329: hgvcn AvLl-A hvqkf DHAT_CITFR : 189- 193: mlgkp ApLt-A atgmd DHAT_CITFR : 189- 194: mlgkp ApLtaA tgmda DHAT_CITFR : 199- 203: atgmd A-LthA veayi DHAT_CITFR : 250- 254: enmay AsLl-A gmafn DHAT_CITFR : 332- 336: aihai ArLs-A digip EUTG_SALTY : 3- 8: mq AeLqtA lfqaf EUTG_SALTY : 8- 12: aelqt A-LfqA fdtln EUTG_SALTY : 36- 39: lcglg A-Lg-A cgqea EUTG_SALTY : 100- 105: vcaav AqLreA acdgv EUTG_SALTY : 191- 195: lmpdv AiLd-A avtdv EUTG_SALTY : 191- 196: lmpdv AiLdaA vtdvp EUTG_SALTY : 212- 216: mtgid A-LthA ieays FUCO_ECOLI : 58- 63: dkmda AgLawA iydgv FUCO_ECOLI : 188- 191: dgmpp A-Lk-A atgvd FUCO_ECOLI : 188- 192: dgmpp A-LkaA tgvda FUCO_ECOLI : 197- 201: atgvd A-LthA iegyi FUCO_ECOLI : 212- 216: trgaw A-LtdA lhika FUCO_ECOLI : 352- 356: kedip A-LaqA alddv GLDA_BACST : 231- 234: kvvtp A-Le-A vvean GLDA_CITFR : 198- 203: gqstv AaLslA rlcyd GLDA_CITFR : 199- 203: qstva A-LslA rlcyd GLDA_CITFR : 351- 355: esvha AiLt-A dllgq GLDA_ECOLI : 175- 179: vagap ArLl-A agigd GLDA_ECOLI : 175- 180: vagap ArLlaA gigda GLDA_ECOLI : 211- 216: gkctq AaLalA elcyn GLDA_ECOLI : 212- 216: kctqa A-LalA elcyn GLDA_ECOLI : 230- 234: eegek AmLa-A eqhvv GLDA_ECOLI : 310- 315: eietv AaLshA vglpi GLDA_ECOLI : 311- 315: ietva A-LshA vglpi GLDA_ECOLI : 363- 368: pdqvy AaLlvA dqygq GLDA_ECOLI : 364- 368: dqvya AlLv-A dqygq GLDA_ECOLI : 364- 368: dqvya A-LlvA dqygq MEDH_BACMT : 55- 60: knire AgLdvA ifpka MEDH_BACMT : 182- 187: mvkkp AgLtiA tgmda MEDH_BACMT : 192- 196: atgmd A-LshA ieayv YIAY_ECOLI : 108- 111: cakgi A-Lv-A anggd YIAY_ECOLI : 108- 112: cakgi A-LvaA nggdi YIAY_ECOLI : 195- 199: atgmd A-LthA ieayv YIAY_ECOLI : 216- 219: itdac A-Lk-A vtmia YIAY_ECOLI : 357- 361: vlatn A-LkdA cgftn O 15: 11.5102 48( 17) A-x(3)-A-x(1,3)-L Occurences: 48(17) 4HDB_CLOKL : 247- 255: iafgn AgvgAvhaL sypig ADH1_CLOAB : 249- 255: clagm AfsnAl--L gichs ADH2_ZYMMO : 219- 226: calka AsmiAkn-L ktacd ADH2_ZYMMO : 241- 248: mpare AmayAqf-L agmaf ADH2_ZYMMO : 252- 258: flagm AfnnAs--L gyvha ADH2_ZYMMO : 292- 299: vlayn AsvvAgr-L kdvgv ADH2_ZYMMO : 321- 329: kegae AtiqAvrdL aasig ADH2_ZYMMO : 356- 363: lladh AlkdAca-L tnprq ADH4_YEAST : 76- 82: pnpni AnvtAg--L kvlke ADH4_YEAST : 105- 111: sahdn AkaiAl--L atngg ADH4_YEAST : 187- 194: fglpp AltaAtg-L dalth ADH4_YEAST : 254- 260: ylagm AfnnAs--L gyvha ADH4_YEAST : 354- 361: ilaeh AmhdAch-L tnpvq ADHA_CLOAB : 247- 255: anlmw AsslAingL lslgk ADHB_CLOAB : 247- 255: anlmw AsslAingL ltygk ADHE_CLOAB : 41- 49: rnaam AaidArieL akaav ADHE_CLOAB : 350- 357: dnfdd AlkkAvt-L inlgg ADHE_CLOAB : 630- 636: mtpnm AivdAe--L mmkmp ADHE_CLOAB : 711- 717: tmagm AsanAf--L glchs ADHE_CLOAB : 711- 719: tmagm AsanAflgL chsma ADHE_ECOLI : 40- 48: raaal AaadAripL akmav ADHE_ECOLI : 300- 306: ivgqp AykiAe--L agfsv ADHE_ECOLI : 351- 358: kdfed AvekAek-L vamgg ADHE_ECOLI : 631- 637: ltpdm AivdAn--L vmdmp ADHE_ECOLI : 712- 718: tiagi AfanAf--L gvchs ADHF_SCHPO : 147- 153: sahdc AkgiAl--L atngg ADHF_SCHPO : 296- 302: flggm AfnnAs--L gyvha DHAT_CITFR : 219- 226: pvtda AaiqAir-L iarnl DHAT_CITFR : 257- 263: llagm AfnnAn--L gyvha EUTG_SALTY : 8- 16: aelqt AlfqAfdtL nlqrv EUTG_SALTY : 63- 69: sflhq AgmtAp--L arsla EUTG_SALTY : 122- 128: svlda AkavAl--L vtnpd EUTG_SALTY : 269- 275: cmagm AfssAg--L glcha EUTG_SALTY : 269- 277: cmagm AfssAglgL chama EUTG_SALTY : 362- 370: pehys AwarAggyL saqyp FUCO_ECOLI : 322- 330: eearn AaveAvfaL nrdvg FUCO_ECOLI : 352- 358: kedip AlaqAa--L ddvct GLDA_BACST : 102- 109: ktldt AkavAde-L dayiv GLDA_BACST : 168- 175: pprll AsgiAda-L atwve GLDA_BACST : 234- 241: tpale AvveAnt-L lsglg GLDA_BACST : 234- 242: tpale AvveAntlL sglgf GLDA_CITFR : 199- 205: qstva AlslAr--L cydtl GLDA_CITFR : 351- 357: esvha AiltAd--L lgqqw GLDA_CITFR : 351- 358: esvha AiltAdl-L gqqwl GLDA_ECOLI : 96- 102: giaet AqcgAi--L giggg GLDA_ECOLI : 171- 177: dtkiv AgapAr--L laagi GLDA_ECOLI : 171- 178: dtkiv AgapArl-L aagig GLDA_ECOLI : 212- 218: kctqa AlalAe--L cyntl GLDA_ECOLI : 311- 318: ietva AlshAvg-L pitla MEDH_BACMT : 316- 324: lstaa AaerAivaL erynk YIAY_ECOLI : 242- 249: akare AmayAqf-L agmaf YIAY_ECOLI : 253- 259: flagm AfnnAs--L gyvha YIAY_ECOLI : 322- 330: aegae AcinAireL akkvd P 16: 11.5102 47( 17) A-x(3,4)-A-x(2,3)-G Occurences: 47(17) 4HDB_CLOKL : 243- 250: nyagi Afgn-Agv-G avhal ADH1_CLOAB : 249- 256: clagm Afsn-All-G ichsm ADH1_CLOAB : 355- 362: liser Aigd-Act-G snprq ADH2_ZYMMO : 105- 113: hdcak AialvAtn-G gevkd ADH2_ZYMMO : 105- 114: hdcak AialvAtngG evkdy ADH2_ZYMMO : 252- 259: flagm Afnn-Asl-G yvham ADH2_ZYMMO : 325- 334: eatiq AvrdlAasiG ipanl ADH4_YEAST : 107- 115: hdnak AiallAtn-G geigd ADH4_YEAST : 107- 116: hdnak AiallAtngG eigdy ADH4_YEAST : 254- 261: ylagm Afnn-Asl-G yvhal ADHA_CLOAB : 247- 254: anlmw Assl-Ain-G llslg ADHB_CLOAB : 247- 254: anlmw Assl-Ain-G lltyg ADHE_CLOAB : 185- 193: ylmqk AditlAtg-G pslvk ADHE_CLOAB : 299- 307: ivgqs AytiaAma-G ikvpk ADHE_CLOAB : 299- 307: ivgqs Ayti-AamaG ikvpk ADHE_CLOAB : 592- 600: kamlv AittsAgs-G sevtp ADHE_CLOAB : 711- 718: tmagm Asan-Afl-G lchsm ADHE_ECOLI : 49- 57: aripl AkmavAes-G mgive ADHE_ECOLI : 290- 297: ilkng Alna-Aiv-G qpayk ADHE_ECOLI : 300- 308: ivgqp Ayki-AelaG fsvpe ADHE_ECOLI : 355- 363: davek AeklvAmg-G ights ADHE_ECOLI : 712- 719: tiagi Afan-Afl-G vchsm ADHF_SCHPO : 296- 303: flggm Afnn-Asl-G yvham DHAT_CITFR : 189- 196: mlgkp Aplt-Aat-G mdalt DHAT_CITFR : 257- 264: llagm Afnn-Anl-G yvham DHAT_CITFR : 332- 339: aihai Arls-Adi-G ipqhl EUTG_SALTY : 39- 48: lgalg AcgqeAqarG vshlf EUTG_SALTY : 70- 77: mtapl Arsl-Amk-G vamtv EUTG_SALTY : 100- 109: vcaav AqlreAacdG vvafg EUTG_SALTY : 153- 161: rlpli AvpttAgt-G settn EUTG_SALTY : 269- 276: cmagm Afss-Agl-G lcham FUCO_ECOLI : 58- 67: dkmda AglawAiydG vvpnp FUCO_ECOLI : 89- 97: fqnsg AdyliAig-G gspqd FUCO_ECOLI : 89- 98: fqnsg AdyliAiggG spqdt FUCO_ECOLI : 197- 204: atgvd Alth-Aie-G yitrg GLDA_BACST : 253- 261: esggl Aaah-AihnG ftale GLDA_CITFR : 217- 224: aegek Arfa-Aqa-G vvtda GLDA_CITFR : 251- 259: essgl Agah-AihnG ftile GLDA_CITFR : 350- 359: pesvh AailtAdllG qqwla GLDA_CITFR : 351- 359: esvha Ailt-AdllG qqwla GLDA_ECOLI : 96- 103: giaet Aqcg-Ail-G igggk GLDA_ECOLI : 113- 121: ktldt Akal-AhfmG vpvai GLDA_ECOLI : 175- 183: vagap ArllaAgi-G dalat GLDA_ECOLI : 175- 183: vagap Arll-AagiG dalat GLDA_ECOLI : 264- 272: esggl Aaah-AvhnG ltaip GLDA_ECOLI : 363- 372: pdqvy AallvAdqyG qrflq GLDA_ECOLI : 364- 372: dqvya Allv-AdqyG qrflq MEDH_BACMT : 103- 111: hdtak AiglvAan-G grind MEDH_BACMT : 103- 112: hdtak AiglvAangG rindy MEDH_BACMT : 132- 140: vvpvv AitttAgt-G setts YIAY_ECOLI : 22- 30: dsltd AmnmmAdy-G ftrtl YIAY_ECOLI : 108- 115: cakgi Alva-Ang-G dirdy YIAY_ECOLI : 253- 260: flagm Afnn-Asl-G yvham Q 17: 11.5102 57( 17) A-x(2,3)-L-x(0,1)-A Occurences: 57(17) 4HDB_CLOKL : 152- 158: tkkgi AsdeLyA tyavl ADH1_CLOAB : 129- 133: elrnk Akf-L-A ipsts ADH1_CLOAB : 242- 246: eqmhy Aqc-L-A gmafs ADH2_ZYMMO : 51- 56: vvkqv Adl-LkA qgins ADH2_ZYMMO : 105- 110: hdcak Aia-LvA tngge ADH2_ZYMMO : 213- 218: tpitd Aca-LkA asmia ADH2_ZYMMO : 245- 249: eamay Aqf-L-A gmafn ADH2_ZYMMO : 325- 330: eatiq AvrdL-A asigi ADH2_ZYMMO : 325- 331: eatiq AvrdLaA sigip ADH4_YEAST : 107- 112: hdnak AialL-A tngge ADH4_YEAST : 107- 112: hdnak Aia-LlA tngge ADH4_YEAST : 130- 136: nqskk AalpLfA intta ADH4_YEAST : 131- 136: qskka Alp-LfA intta ADH4_YEAST : 190- 196: ppalt AatgLdA lthci ADH4_YEAST : 191- 196: palta Atg-LdA lthci ADH4_YEAST : 247- 251: tdmcy Aey-L-A gmafn ADHA_CLOAB : 247- 251: anlmw Ass-L-A ingll ADHB_CLOAB : 247- 251: anlmw Ass-L-A ingll ADHE_CLOAB : 45- 50: maaid ArieL-A kaavl ADHE_CLOAB : 150- 156: stila AktiLdA avksg ADHE_CLOAB : 185- 190: ylmqk AditL-A tggps ADHE_ECOLI : 36- 40: dkifr Aaa-L-A aadar ADHE_ECOLI : 36- 41: dkifr Aaa-LaA adari ADHE_ECOLI : 44- 49: laaad AripL-A kmava ADHE_ECOLI : 149- 155: atnka AdivLqA aiaag ADHE_ECOLI : 355- 360: davek Aek-LvA mggig ADHE_ECOLI : 647- 653: pkslc AfggLdA vtham ADHE_ECOLI : 822- 826: agvqe Adf-L-A nvdkl ADHF_SCHPO : 325- 329: hgvcn Avl-L-A hvqkf DHAT_CITFR : 223- 228: aaaiq Air-LiA rnlrq DHAT_CITFR : 248- 254: arenm AyasLlA gmafn DHAT_CITFR : 250- 254: enmay Asl-L-A gmafn DHAT_CITFR : 293- 299: llphv ArynLiA npekf DHAT_CITFR : 323- 327: lstmd Aae-L-A ihaia DHAT_CITFR : 330- 336: elaih AiarLsA digip EUTG_SALTY : 70- 74: mtapl Ars-L-A mkgva EUTG_SALTY : 336- 342: rdaia AvceLiA evgqs EUTG_SALTY : 366- 372: sawar AggyLsA qyprt FUCO_ECOLI : 57- 61: tdkmd Aag-L-A waiyd FUCO_ECOLI : 89- 94: fqnsg Ady-LiA igggs FUCO_ECOLI : 266- 271: lvhgm Ahp-LgA fyntp GLDA_BACST : 106- 111: takav Ade-LdA yiviv GLDA_BACST : 162- 168: kiian ApprLlA sgiad GLDA_BACST : 172- 176: lasgi Ada-L-A twvea GLDA_CITFR : 25- 29: lfgqy Akn-L-A dsffv GLDA_CITFR : 198- 203: gqstv AalsL-A rlcyd GLDA_CITFR : 199- 203: qstva Als-L-A rlcyd GLDA_CITFR : 276- 281: hgekv AfgtL-A qlvlq GLDA_CITFR : 350- 355: pesvh Aai-LtA dllgq GLDA_ECOLI : 113- 117: ktldt Aka-L-A hfmgv GLDA_ECOLI : 173- 179: kivag AparLlA agigd GLDA_ECOLI : 175- 179: vagap Arl-L-A agigd GLDA_ECOLI : 175- 180: vagap Arl-LaA gigda GLDA_ECOLI : 211- 216: gkctq AalaL-A elcyn GLDA_ECOLI : 212- 216: kctqa Ala-L-A elcyn GLDA_ECOLI : 363- 368: pdqvy Aal-LvA dqygq MEDH_BACMT : 103- 108: hdtak Aig-LvA anggr MEDH_BACMT : 287- 292: mphvc Afn-LiA kterf YIAY_ECOLI : 214- 219: tpitd Aca-LkA vtmia YIAY_ECOLI : 246- 250: eamay Aqf-L-A gmafn YIAY_ECOLI : 326- 331: eacin AireL-A kkvdi R 18: 11.5102 36( 17) V-x(2,3)-A-x(1,2)-L Occurences: 36(17) 4HDB_CLOKL : 90- 97: vgggs VidiAkiL slkyt 4HDB_CLOKL : 137- 142: sevtn Vsv-Ae-L krrht ADH1_CLOAB : 72- 78: psvet VfkgAe-L mrqfe ADH2_ZYMMO : 47- 53: nksgv VkqvAd-L lkaqg ADH2_ZYMMO : 47- 54: nksgv VkqvAdlL kaqgi ADH2_ZYMMO : 261- 268: aslgy VhamAhqL ggyyn ADH2_ZYMMO : 278- 283: nlphg Vcn-Av-L lphvl ADH2_ZYMMO : 278- 284: nlphg Vcn-AvlL phvla ADH2_ZYMMO : 302- 308: grlkd Vgv-AmgL dianl ADH4_YEAST : 263- 270: aslgy VhalAhqL ggfyh ADH4_YEAST : 280- 285: hlphg Vcn-Av-L lphvq ADH4_YEAST : 280- 286: hlphg Vcn-AvlL phvqe ADHA_CLOAB : 130- 137: skitk VlpiAsiL tlsat ADHA_CLOAB : 283- 288: dithg Vgl-Ai-L tpnwm ADHB_CLOAB : 130- 137: skikr VlpiAsiL tiaat ADHB_CLOAB : 283- 288: dithg Vgl-Ai-L tpnwm ADHE_CLOAB : 514- 520: kvfnk VgreAd-L ktikk ADHE_ECOLI : 2- 8: a VtnvAe-L nalve ADHE_ECOLI : 352- 358: dfeda Vek-AekL vamgg ADHE_ECOLI : 524- 530: ptlsi VrkgAe-L ansfk ADHE_ECOLI : 819- 825: ireag Vqe-AdfL anvdk ADHF_SCHPO : 305- 312: aslgy VhamAhqL ggfyg ADHF_SCHPO : 322- 327: giphg Vcn-Av-L lahvq ADHF_SCHPO : 322- 328: giphg Vcn-AvlL ahvqk DHAT_CITFR : 266- 273: anlgy VhamAhqL gglyd DHAT_CITFR : 283- 288: dmphg Van-Av-L lphva DHAT_CITFR : 283- 289: dmphg Van-AvlL phvar EUTG_SALTY : 180- 186: sgrkq VlahAs-L mpdva FUCO_ECOLI : 262- 269: vglgl VhgmAhpL gafyn FUCO_ECOLI : 279- 284: ntphg Van-Ai-L lphvm FUCO_ECOLI : 279- 285: ntphg Van-AilL phvmr GLDA_BACST : 235- 241: palea Vve-AntL lsglg GLDA_CITFR : 348- 353: vtpes Vha-Ai-L tadll GLDA_ECOLI : 361- 366: atpdq Vya-Al-L vadqy MEDH_BACMT : 34- 39: kkali Vtd-Af-L hstgl MEDH_BACMT : 178- 184: dpelm VkkpAg-L tiatg YIAY_ECOLI : 13- 19: ipsvn Vig-AdsL tdamn YIAY_ECOLI : 220- 227: calka VtmiAenL plave YIAY_ECOLI : 262- 269: aslgy VhamAhqL ggfyn YIAY_ECOLI : 279- 284: nlphg Vcn-Av-L lphvq YIAY_ECOLI : 279- 285: nlphg Vcn-AvlL phvqv YIAY_ECOLI : 295- 300: vfnsk Vaa-Ar-L rdcaa YIAY_ECOLI : 334- 340: elakk VdipAg-L rdlnv S 19: 11.5102 31( 17) V-x(2,3)-A-x(0,1)-L Occurences: 31(17) 4HDB_CLOKL : 137- 142: sevtn Vsv-AeL krrht ADH1_CLOAB : 72- 78: psvet VfkgAeL mrqfe ADH2_ZYMMO : 47- 53: nksgv VkqvAdL lkaqg ADH2_ZYMMO : 278- 283: nlphg Vcn-AvL lphvl ADH4_YEAST : 280- 285: hlphg Vcn-AvL lphvq ADHA_CLOAB : 283- 288: dithg Vgl-AiL tpnwm ADHB_CLOAB : 283- 288: dithg Vgl-AiL tpnwm ADHE_CLOAB : 514- 520: kvfnk VgreAdL ktikk ADHE_CLOAB : 603- 608: gsgse VtpfA-L vtdnn ADHE_ECOLI : 2- 8: a VtnvAeL nalve ADHE_ECOLI : 524- 530: ptlsi VrkgAeL ansfk ADHE_ECOLI : 538- 542: sfkpd Vii-A-L gggsp ADHF_SCHPO : 322- 327: giphg Vcn-AvL lahvq DHAT_CITFR : 283- 288: dmphg Van-AvL lphva EUTG_SALTY : 180- 186: sgrkq VlahAsL mpdva FUCO_ECOLI : 279- 284: ntphg Van-AiL lphvm GLDA_BACST : 227- 232: svkak VvtpA-L eavve GLDA_BACST : 228- 232: vkakv Vtp-A-L eavve GLDA_BACST : 284- 288: afgtl Vql-A-L eehsq GLDA_CITFR : 225- 230: aaqag VvtdA-L erive GLDA_CITFR : 226- 230: aqagv Vtd-A-L erive GLDA_CITFR : 348- 353: vtpes Vha-AiL tadll GLDA_ECOLI : 238- 243: aaeqh VvtpA-L ervie GLDA_ECOLI : 239- 243: aeqhv Vtp-A-L ervie GLDA_ECOLI : 361- 365: atpdq Vya-A-L lvadq GLDA_ECOLI : 361- 366: atpdq Vya-AlL vadqy MEDH_BACMT : 34- 39: kkali Vtd-AfL hstgl MEDH_BACMT : 178- 184: dpelm VkkpAgL tiatg YIAY_ECOLI : 51- 55: gmagd Vqk-A-L eerni YIAY_ECOLI : 279- 284: nlphg Vcn-AvL lphvq YIAY_ECOLI : 295- 300: vfnsk Vaa-ArL rdcaa YIAY_ECOLI : 334- 340: elakk VdipAgL rdlnv T 20: 11.5102 42( 17) A-x(2,3)-A-x(1,2)-G Occurences: 42(17) 4HDB_CLOKL : 240- 245: igsny Agi-Af-G nagvg 4HDB_CLOKL : 243- 250: nyagi AfgnAgvG avhal ADH1_CLOAB : 249- 256: clagm AfsnAllG ichsm ADH1_CLOAB : 355- 362: liser AigdActG snprq ADH2_ZYMMO : 107- 113: cakai Alv-AtnG gevkd ADH2_ZYMMO : 252- 259: flagm AfnnAslG yvham ADH4_YEAST : 109- 115: nakai All-AtnG geigd ADH4_YEAST : 187- 193: fglpp AltaAt-G ldalt ADH4_YEAST : 187- 193: fglpp Alt-AatG ldalt ADH4_YEAST : 254- 261: ylagm AfnnAslG yvhal ADHA_CLOAB : 247- 254: anlmw AsslAinG llslg ADHB_CLOAB : 247- 254: anlmw AsslAinG lltyg ADHE_CLOAB : 711- 718: tmagm AsanAflG lchsm ADHE_ECOLI : 155- 160: divlq Aai-Aa-G apkdl ADHE_ECOLI : 290- 297: ilkng AlnaAivG qpayk ADHE_ECOLI : 712- 719: tiagi AfanAflG vchsm ADHF_SCHPO : 143- 149: igggs AhdcAk-G ialla ADHF_SCHPO : 151- 157: cakgi All-AtnG gkiad ADHF_SCHPO : 296- 303: flggm AfnnAslG yvham ADHF_SCHPO : 396- 402: vlvdh AmkdAc-G atnpi DHAT_CITFR : 189- 196: mlgkp ApltAatG mdalt DHAT_CITFR : 257- 264: llagm AfnnAnlG yvham DHAT_CITFR : 332- 339: aihai ArlsAdiG ipqhl EUTG_SALTY : 36- 41: lcglg Alg-Ac-G qeaqa EUTG_SALTY : 70- 77: mtapl ArslAmkG vamtv EUTG_SALTY : 269- 276: cmagm AfssAglG lcham EUTG_SALTY : 362- 368: pehys AwarAg-G ylsaq FUCO_ECOLI : 188- 194: dgmpp AlkaAt-G vdalt FUCO_ECOLI : 188- 194: dgmpp Alk-AatG vdalt FUCO_ECOLI : 197- 204: atgvd AlthAieG yitrg GLDA_BACST : 331- 336: lkvak Aat-Ae-G etihn GLDA_CITFR : 187- 193: cydar AtsmAg-G qstva GLDA_CITFR : 217- 224: aegek ArfaAqaG vvtda GLDA_CITFR : 328- 333: mavak Atc-Ae-G etihn GLDA_ECOLI : 93- 99: rlrgi Aet-AqcG ailgi GLDA_ECOLI : 96- 103: giaet AqcgAilG igggk GLDA_ECOLI : 175- 181: vagap ArllAa-G igdal GLDA_ECOLI : 200- 206: csrsg AttmAg-G kctqa GLDA_ECOLI : 311- 317: ietva AlshAv-G lpitl GLDA_ECOLI : 341- 346: rivae Aac-Ae-G etihn MEDH_BACMT : 199- 204: shaie Ayv-Ak-G atpvt YIAY_ECOLI : 108- 114: cakgi AlvaAn-G gdird YIAY_ECOLI : 108- 114: cakgi Alv-AanG gdird YIAY_ECOLI : 108- 115: cakgi AlvaAngG dirdy YIAY_ECOLI : 253- 260: flagm AfnnAslG yvham YIAY_ECOLI : 357- 363: vlatn AlkdAc-G ftnpi Number of patterns evaluated by Pratt:4521 Total running time: 7 seconds