------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file ADENYLOSUCCINATE_SYN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ADENYLOSUCCINATE_SYN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PUA1_MOUSE 452 PUA2_MOUSE 456 PURA_BACSU 430 PURA_DICDI 427 PURA_ECOLI 431 PURA_HAEIN 431 PURA_HUMAN 455 PURA_SCHPO 434 PURA_VIBPA 438 PURA_YEAST 432 Pratt run started at Thu Feb 6 18:32:21 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 54.2107 10( 10) E-G-A-x(4)-L-D-x-D-x-G-x-Y-P-x-V-T-S-S 2: 50.0406 10( 10) G-x-Q-W-G-D-E-G-K-G-K-x(2)-D-x-L 3: 45.8706 10( 10) G-x(2)-K-A-Y-x-T-x-V-G-x-G-x-F-x-T-E 4: 45.8706 10( 10) A-x(4)-L-D-x-D-x-G-x-Y-P-x-V-T-S-S 5: 45.8706 10( 10) G-x(5)-L-D-x-D-x-G-x-Y-P-x-V-T-S-S 6: 45.8706 10( 10) G-T-x(3)-G-I-x-P-x-Y-x(2)-K-x(2)-R-x-G-x-R-x(3)-L 7: 45.8706 10( 10) G-x-T-x(2)-G-I-x-P-x-Y-x(2)-K-x(2)-R-x-G-x-R-x(3)-L 8: 45.8706 10( 10) Q-W-G-D-E-G-K-G-K-x(2)-D-x-L 9: 45.3706 10( 10) G-x(1,2)-K-A-Y-x-T-x-V-G-x-G-x-F-x-T-E 10: 45.3706 10( 10) G-x-T-x(1,2)-G-I-x-P-x-Y-x(2)-K-x(2)-R-x-G-x-R-x(3)-L 11: 44.8706 10( 10) G-x(2)-K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-x-F-x-T-E 12: 44.8706 10( 10) G-T-T-x(2)-G-I-x-P-x-Y-x(2)-K-x(0,1)-A-x-R-x(0,1)-G 13: 44.8706 10( 10) G-x(0,1)-T-x(2,3)-G-I-x-P-x-Y-x(2)-K-x(2)-R-x-G-x-R-x(3)-L 14: 44.8706 10( 10) G-x(0,1)-T-x(1,2)-G-I-x-P-x-Y-x(2)-K-x(2)-R-x-G-x-R-x(3)-L 15: 41.7005 10( 10) G-x-E-x-G-x(2)-T-G-R-x(2)-R-x-G-W-x-D 16: 41.7005 10( 10) K-A-Y-x-T-x-V-G-x-G-x-F-x-T-E 17: 41.7005 10( 10) L-D-x-D-x-G-x-Y-P-x-V-T-S-S 18: 41.7005 10( 10) W-G-D-E-G-K-G-K-x(2)-D-x-L 19: 41.2005 10( 10) G-x(0,1)-E-x-G-x(2)-T-G-R-x(2)-R-x-G-W-x-D 20: 40.7005 10( 10) K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-x-F-x-T-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 136.7762 10( 10) Q-W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S-G-[ILM] B 2: 136.4917 10( 10) G-[AST]-Q-W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S C 3: 134.8627 10( 10) W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S-G-[ILM]-[FILV] D 4: 128.0174 10( 10) L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP] E 5: 126.7090 10( 10) E-G-A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST] F 6: 126.7090 10( 10) G-A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T G 7: 125.7871 10( 10) A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T-[KR] H 8: 111.8033 10( 10) G-x-E-x-G-[ATV]-[TV]-T-G-R-x(2)-R-x-G-W-[FL]-D-x-[MV]-x-[ILMV]-[KR]-x-[AST]-x(2)-[ILV]-[NS]-[DGS]-x-[ST]-x-[FL]-[ACNS]-[ILM]-[NT]-x-[IL]-D-[IV]-L-[ADS]-x-[FIL]-x-[ET]-[ILV] I 9: 111.3033 10( 10) G-x(0,1)-E-x-G-[ATV]-[TV]-T-G-R-x(2)-R-x-G-W-[FL]-D-x-[MV]-x-[ILMV]-[KR]-x-[AST]-x(2)-[ILV]-[NS]-[DGS]-x-[ST]-x-[FL]-[ACNS]-[ILM]-[NT]-x-[IL]-D-[IV]-L-[ADS]-x-[FIL]-x-[ET]-[ILV] J 10: 70.5790 10( 10) G-T-T-x-[KR]-G-I-x-P-[ACTV]-Y-x-[DST]-K-x(0,1)-A-x-R-x(0,1)-G-[IL]-R-[IMV]-x-[DH]-L K 11: 65.7809 10( 10) G-T-x(3)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L L 12: 65.7809 10( 10) G-x-T-x(2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L M 13: 65.2809 10( 10) G-x-T-x(1,2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L N 14: 64.7809 10( 10) G-x(0,1)-T-x(2,3)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L O 15: 64.7809 10( 10) G-x(0,1)-T-x(1,2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L P 16: 64.5617 10( 10) G-x(2)-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Q 17: 64.0617 10( 10) G-x(1,2)-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] R 18: 60.8929 10( 10) G-[IV]-x-K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] S 19: 60.3916 10( 10) K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] T 20: 53.4980 10( 10) K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 136.7762 10( 10) Q-W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S-G-[ILM] Occurences: 10(10) PUA1_MOUSE : 40- 89: vvlga QWGDEGKGKVVDLLATdaDivSRcQGGnNAGHTVvvDGkeydFHLLPSGI intka PUA2_MOUSE : 37- 86: vvlga QWGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPSGI inpnv PURA_BACSU : 10- 59: vvvgt QWGDEGKGKITDFLSEnaEviARyQGGnNAGHTIkfDGitykLHLIPSGI fykdk PURA_DICDI : 9- 58: iiigs QWGDEGKGKLVDILSQqfDvvARcQGGaNAGHTIvvDGkkiaLHLIPSGI lneka PURA_ECOLI : 10- 59: vvlgt QWGDEGKGKIVDLLTEraKyvVRyQGGhNAGHTLviNGektvLHLIPSGI lrenv PURA_HAEIN : 10- 59: vilga QWGDEGKGKIVDLLTDrvKyvVRyQGGhNAGHTLiiNGektvLRLIPSGM lhpnv PURA_HUMAN : 36- 85: vvlga QWGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPSGI inpnv PURA_SCHPO : 23- 72: vvlgs QWGDEGKGKLVDILCDnvDvcARcQGGnNAGHTIvaNGvtydFHILPSGL vnpkc PURA_VIBPA : 11- 60: vvlgt QWGDEGKGKIVDLLTEdaKyvVRyQGGhNAGHTLviDGektvLHLIPSGI lrdnv PURA_YEAST : 8- 57: vvlgs QWGDEGKGKLVDLLVGkyDivARcAGGnNAGHTIvvDGvkydFHMLPSGL vnpnc B 2: 136.4917 10( 10) G-[AST]-Q-W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S Occurences: 10(10) PUA1_MOUSE : 38- 87: vtvvl GAQWGDEGKGKVVDLLATdaDivSRcQGGnNAGHTVvvDGkeydFHLLPS giint PUA2_MOUSE : 35- 84: vtvvl GAQWGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPS giinp PURA_BACSU : 8- 57: svvvv GTQWGDEGKGKITDFLSEnaEviARyQGGnNAGHTIkfDGitykLHLIPS gifyk PURA_DICDI : 7- 56: asiii GSQWGDEGKGKLVDILSQqfDvvARcQGGaNAGHTIvvDGkkiaLHLIPS gilne PURA_ECOLI : 8- 57: nvvvl GTQWGDEGKGKIVDLLTEraKyvVRyQGGhNAGHTLviNGektvLHLIPS gilre PURA_HAEIN : 8- 57: svvil GAQWGDEGKGKIVDLLTDrvKyvVRyQGGhNAGHTLiiNGektvLRLIPS gmlhp PURA_HUMAN : 34- 83: vtvvl GAQWGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPS giinp PURA_SCHPO : 21- 70: itvvl GSQWGDEGKGKLVDILCDnvDvcARcQGGnNAGHTIvaNGvtydFHILPS glvnp PURA_VIBPA : 9- 58: nvvvl GTQWGDEGKGKIVDLLTEdaKyvVRyQGGhNAGHTLviDGektvLHLIPS gilrd PURA_YEAST : 6- 55: vnvvl GSQWGDEGKGKLVDLLVGkyDivARcAGGnNAGHTIvvDGvkydFHMLPS glvnp C 3: 134.8627 10( 10) W-G-D-E-G-K-G-K-[ILV]-[TV]-D-[FIL]-L-[ACSTV]-[DEGQT]-x(2)-[DEK]-x(2)-[ACSV]-R-x-[AQ]-G-G-x-N-A-G-H-T-[ILV]-x(2)-[DN]-[GS]-x(4)-[FL]-[HR]-[ILM]-[IL]-P-S-G-[ILM]-[FILV] Occurences: 10(10) PUA1_MOUSE : 41- 90: vlgaq WGDEGKGKVVDLLATdaDivSRcQGGnNAGHTVvvDGkeydFHLLPSGII ntkav PUA2_MOUSE : 38- 87: vlgaq WGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPSGII npnvt PURA_BACSU : 11- 60: vvgtq WGDEGKGKITDFLSEnaEviARyQGGnNAGHTIkfDGitykLHLIPSGIF ykdkt PURA_DICDI : 10- 59: iigsq WGDEGKGKLVDILSQqfDvvARcQGGaNAGHTIvvDGkkiaLHLIPSGIL nekas PURA_ECOLI : 11- 60: vlgtq WGDEGKGKIVDLLTEraKyvVRyQGGhNAGHTLviNGektvLHLIPSGIL renvt PURA_HAEIN : 11- 60: ilgaq WGDEGKGKIVDLLTDrvKyvVRyQGGhNAGHTLiiNGektvLRLIPSGML hpnvt PURA_HUMAN : 37- 86: vlgaq WGDEGKGKVVDLLAQdaDivCRcQGGnNAGHTVvvDSveydFHLLPSGII npnvt PURA_SCHPO : 24- 73: vlgsq WGDEGKGKLVDILCDnvDvcARcQGGnNAGHTIvaNGvtydFHILPSGLV npkcq PURA_VIBPA : 12- 61: vlgtq WGDEGKGKIVDLLTEdaKyvVRyQGGhNAGHTLviDGektvLHLIPSGIL rdnvk PURA_YEAST : 9- 58: vlgsq WGDEGKGKLVDLLVGkyDivARcAGGnNAGHTIvvDGvkydFHMLPSGLV npncq D 4: 128.0174 10( 10) L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP] Occurences: 10(10) PUA1_MOUSE : 260- 309: anaal LDIDfGTYPFVTSSNcTVGGVcTGlGiPpqnIgdvyGVvKAYTTRVGiGA fpteq PUA2_MOUSE : 259- 308: anaal LDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTTRVGiGA fpteq PURA_BACSU : 227- 276: aqgvm LDIDqGTYPFVTSSNpVAAVSqSVlVsArpkIkhvvGVsKAYTTRVGdGP fptel PURA_DICDI : 227- 276: aqstm LDLDfGCYPYVTSSAsSVGGAcTGlGiSpnkVvtqiGVvKAYTTKVGsGP fpteq PURA_ECOLI : 228- 277: aqgtl LDIDhGTYPYVTSSNtTAGGVaTGsGlGpryVdyvlGIlKAYSTRVGaGP fptel PURA_HAEIN : 228- 277: aqgtm LDIDhGTYPYVTSSNtTAGGVaTGsGfGprnLdyvlGIiKAYCTRVGgGP fttel PURA_HUMAN : 258- 307: anaal LDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTTRVGiGA fpteq PURA_SCHPO : 237- 286: analm LDLDfGTYPFVTSSNtTVGGVcTGlGvPpqrIansiGVvKAYTTRVGaGP fpteq PURA_VIBPA : 229- 278: aqgtl LDIDhGTYPYVTSSNtTAGGVaAGsGfGprhIgyilGIaKAYCTRVGaGP fptel PURA_YEAST : 233- 282: analm LDIDfGTYPYVTSSNtGIGGVlTGlGiPprtIdeiyGVvKAYTTRVGeGP fpteq E 5: 126.7090 10( 10) E-G-A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST] Occurences: 10(10) PUA1_MOUSE : 253- 302: kkvlv EGANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGiPpqnIgdvyGVvKAYT trvgi PUA2_MOUSE : 252- 301: kkilv EGANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYT trvgi PURA_BACSU : 220- 269: rrvlf EGAQGvMLDIDqGTYPFVTSSNpVAAVSqSVlVsArpkIkhvvGVsKAYT trvgd PURA_DICDI : 220- 269: kkvli EGAQStMLDLDfGCYPYVTSSAsSVGGAcTGlGiSpnkVvtqiGVvKAYT tkvgs PURA_ECOLI : 221- 270: dfvmf EGAQGtLLDIDhGTYPYVTSSNtTAGGVaTGsGlGpryVdyvlGIlKAYS trvga PURA_HAEIN : 221- 270: ehilf EGAQGtMLDIDhGTYPYVTSSNtTAGGVaTGsGfGprnLdyvlGIiKAYC trvgg PURA_HUMAN : 251- 300: kkilv EGANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYT trvgi PURA_SCHPO : 230- 279: krilv EGANAlMLDLDfGTYPFVTSSNtTVGGVcTGlGvPpqrIansiGVvKAYT trvga PURA_VIBPA : 222- 271: dkimf EGAQGtLLDIDhGTYPYVTSSNtTAGGVaAGsGfGprhIgyilGIaKAYC trvga PURA_YEAST : 226- 275: kkilv EGANAlMLDIDfGTYPYVTSSNtGIGGVlTGlGiPprtIdeiyGVvKAYT trvge F 6: 126.7090 10( 10) G-A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T Occurences: 10(10) PUA1_MOUSE : 254- 303: kvlve GANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGiPpqnIgdvyGVvKAYTT rvgig PUA2_MOUSE : 253- 302: kilve GANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTT rvgig PURA_BACSU : 221- 270: rvlfe GAQGvMLDIDqGTYPFVTSSNpVAAVSqSVlVsArpkIkhvvGVsKAYTT rvgdg PURA_DICDI : 221- 270: kvlie GAQStMLDLDfGCYPYVTSSAsSVGGAcTGlGiSpnkVvtqiGVvKAYTT kvgsg PURA_ECOLI : 222- 271: fvmfe GAQGtLLDIDhGTYPYVTSSNtTAGGVaTGsGlGpryVdyvlGIlKAYST rvgag PURA_HAEIN : 222- 271: hilfe GAQGtMLDIDhGTYPYVTSSNtTAGGVaTGsGfGprnLdyvlGIiKAYCT rvggg PURA_HUMAN : 252- 301: kilve GANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTT rvgig PURA_SCHPO : 231- 280: rilve GANAlMLDLDfGTYPFVTSSNtTVGGVcTGlGvPpqrIansiGVvKAYTT rvgag PURA_VIBPA : 223- 272: kimfe GAQGtLLDIDhGTYPYVTSSNtTAGGVaAGsGfGprhIgyilGIaKAYCT rvgag PURA_YEAST : 227- 276: kilve GANAlMLDIDfGTYPYVTSSNtGIGGVlTGlGiPprtIdeiyGVvKAYTT rvgeg G 7: 125.7871 10( 10) A-[NQ]-[AGS]-x-[LM]-L-D-[IL]-D-x-G-[CT]-Y-P-[FY]-V-T-S-S-[AN]-x-[GSTV]-[AIV]-[AG]-[GV]-[ASV]-x-[AST]-[GV]-x-[GV]-x-[AGPS]-x(3)-[ILV]-x(4)-G-[IV]-x-K-A-Y-[CST]-T-[KR] Occurences: 10(10) PUA1_MOUSE : 255- 304: vlveg ANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGiPpqnIgdvyGVvKAYTTR vgiga PUA2_MOUSE : 254- 303: ilveg ANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTTR vgiga PURA_BACSU : 222- 271: vlfeg AQGvMLDIDqGTYPFVTSSNpVAAVSqSVlVsArpkIkhvvGVsKAYTTR vgdgp PURA_DICDI : 222- 271: vlieg AQStMLDLDfGCYPYVTSSAsSVGGAcTGlGiSpnkVvtqiGVvKAYTTK vgsgp PURA_ECOLI : 223- 272: vmfeg AQGtLLDIDhGTYPYVTSSNtTAGGVaTGsGlGpryVdyvlGIlKAYSTR vgagp PURA_HAEIN : 223- 272: ilfeg AQGtMLDIDhGTYPYVTSSNtTAGGVaTGsGfGprnLdyvlGIiKAYCTR vgggp PURA_HUMAN : 253- 302: ilveg ANAaLLDIDfGTYPFVTSSNcTVGGVcTGlGmPpqnVgevyGVvKAYTTR vgiga PURA_SCHPO : 232- 281: ilveg ANAlMLDLDfGTYPFVTSSNtTVGGVcTGlGvPpqrIansiGVvKAYTTR vgagp PURA_VIBPA : 224- 273: imfeg AQGtLLDIDhGTYPYVTSSNtTAGGVaAGsGfGprhIgyilGIaKAYCTR vgagp PURA_YEAST : 228- 277: ilveg ANAlMLDIDfGTYPYVTSSNtGIGGVlTGlGiPprtIdeiyGVvKAYTTR vgegp H 8: 111.8033 10( 10) G-x-E-x-G-[ATV]-[TV]-T-G-R-x(2)-R-x-G-W-[FL]-D-x-[MV]-x-[ILMV]-[KR]-x-[AST]-x(2)-[ILV]-[NS]-[DGS]-x-[ST]-x-[FL]-[ACNS]-[ILM]-[NT]-x-[IL]-D-[IV]-L-[ADS]-x-[FIL]-x-[ET]-[ILV] Occurences: 10(10) PUA1_MOUSE : 326- 373: llqnr GhEwGVTTGRkrRcGWLDlMiLRyAhmVNGfTaLALTkLDILDvLsEI kvgis PUA2_MOUSE : 325- 372: llqtr GrEfGVTTGRkrRcGWLDlVsLKyAhmINGfTaLALTkLDILDmFtEI kvgva PURA_BACSU : 293- 340: qirev GrEyGTTTGRppRvGWFDsVvVRhArrVSGiTdLSLNsIDVLAgIeTL kicvr PURA_DICDI : 293- 340: slrka GsEfGTTTGRprRiGWLDaVvLRyTsmINDfTrLNLTkLDVLSdFeEI kigvd PURA_ECOLI : 294- 341: flckq GnEfGATTGRrrRtGWLDtVaVRrAvqLNSlSgFCLTkLDVLDgLkEV klcva PURA_HAEIN : 294- 341: eiark GnEfGAVTGRprRcGWFDaVaIRrAiqLNSiSgFCMTkLDVLDgFdEV kicva PURA_HUMAN : 324- 371: llqtr GrEfGVTTGRkrRcGWLDlVlLKyAhmINGfTaLALTkLDILDmFtEI kvgva PURA_SCHPO : 303- 350: hlqsv GrEvGVTTGRkrRcGWLDlVvVKyStmINGyTsLNLTkLDILDaLdEI kvava PURA_VIBPA : 301- 348: hlgtv GhEfGATTGRlrRtGWFDaVaMRrAiqINSvSgFCLTkLDVLDgLeEL kictg PURA_YEAST : 299- 346: klqti GaEfGVTTGRkrRcGWLDlVvLKyStlINGyTsLNITkLDVLDtFkEI pvgis I 9: 111.3033 10( 10) G-x(0,1)-E-x-G-[ATV]-[TV]-T-G-R-x(2)-R-x-G-W-[FL]-D-x-[MV]-x-[ILMV]-[KR]-x-[AST]-x(2)-[ILV]-[NS]-[DGS]-x-[ST]-x-[FL]-[ACNS]-[ILM]-[NT]-x-[IL]-D-[IV]-L-[ADS]-x-[FIL]-x-[ET]-[ILV] Occurences: 10(10) PUA1_MOUSE : 326- 373: llqnr GhEwGVTTGRkrRcGWLDlMiLRyAhmVNGfTaLALTkLDILDvLsEI kvgis PUA2_MOUSE : 325- 372: llqtr GrEfGVTTGRkrRcGWLDlVsLKyAhmINGfTaLALTkLDILDmFtEI kvgva PURA_BACSU : 293- 340: qirev GrEyGTTTGRppRvGWFDsVvVRhArrVSGiTdLSLNsIDVLAgIeTL kicvr PURA_DICDI : 293- 340: slrka GsEfGTTTGRprRiGWLDaVvLRyTsmINDfTrLNLTkLDVLSdFeEI kigvd PURA_ECOLI : 294- 341: flckq GnEfGATTGRrrRtGWLDtVaVRrAvqLNSlSgFCLTkLDVLDgLkEV klcva PURA_HAEIN : 294- 341: eiark GnEfGAVTGRprRcGWFDaVaIRrAiqLNSiSgFCMTkLDVLDgFdEV kicva PURA_HUMAN : 324- 371: llqtr GrEfGVTTGRkrRcGWLDlVlLKyAhmINGfTaLALTkLDILDmFtEI kvgva PURA_SCHPO : 303- 350: hlqsv GrEvGVTTGRkrRcGWLDlVvVKyStmINGyTsLNLTkLDILDaLdEI kvava PURA_VIBPA : 301- 348: hlgtv GhEfGATTGRlrRtGWFDaVaMRrAiqINSvSgFCLTkLDVLDgLeEL kictg PURA_YEAST : 299- 346: klqti GaEfGVTTGRkrRcGWLDlVvLKyStlINGyTsLNITkLDVLDtFkEI pvgis J 10: 70.5790 10( 10) G-T-T-x-[KR]-G-I-x-P-[ACTV]-Y-x-[DST]-K-x(0,1)-A-x-R-x(0,1)-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GTTkKGIgPTYsSK-AaRtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GTTkKGIrPVYsSK-AaRsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GTTkKGIgPAYmDK-AaRiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GTTkRGIgPCYsSK-AsRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GTTgRGIgPAYeDKvArR-GLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GTTgRGIgPAYeDKvArR-GLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GTTkKGIgPVYsSK-AaRsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GTTgKGIgPAYsTK-AtRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GTTgRGIgPAYeDKvArR-GLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GTTgKGIgPTYsTK-AsRsGLRVhHL vndqp K 11: 65.7809 10( 10) G-T-x(3)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GTtkkGIgPTYsSKAARtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GTtkkGIrPVYsSKAARsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GTtkkGIgPAYmDKAARiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GTtkrGIgPCYsSKASRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GTtgrGIgPAYeDKVARrGLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GTtgrGIgPAYeDKVARrGLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GTtkkGIgPVYsSKAARsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GTtgkGIgPAYsTKATRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GTtgrGIgPAYeDKVARrGLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GTtgkGIgPTYsTKASRsGLRVhHL vndqp L 12: 65.7809 10( 10) G-x-T-x(2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GtTkkGIgPTYsSKAARtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GtTkkGIrPVYsSKAARsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GtTkkGIgPAYmDKAARiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GtTkrGIgPCYsSKASRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GtTgrGIgPAYeDKVARrGLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GtTkkGIgPVYsSKAARsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GtTgkGIgPAYsTKATRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GtTgkGIgPTYsTKASRsGLRVhHL vndqp M 13: 65.2809 10( 10) G-x-T-x(1,2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GtTkkGIgPTYsSKAARtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GtTkkGIrPVYsSKAARsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GtTkkGIgPAYmDKAARiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GtTkrGIgPCYsSKASRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GtTgrGIgPAYeDKVARrGLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GtTkkGIgPVYsSKAARsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GtTgkGIgPAYsTKATRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GtTgkGIgPTYsTKASRsGLRVhHL vndqp N 14: 64.7809 10( 10) G-x(0,1)-T-x(2,3)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GtTkk-GIgPTYsSKAARtGLRIcDL lsdfd PUA1_MOUSE : 161- 185: egkni G-TtkkGIgPTYsSKAARtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GtTkk-GIrPVYsSKAARsGLRMcDL vsdfd PUA2_MOUSE : 160- 184: agknl G-TtkkGIrPVYsSKAARsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GtTkk-GIgPAYmDKAARiGIRIaDL ldrda PURA_BACSU : 126- 150: ganki G-TtkkGIgPAYmDKAARiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GtTkr-GIgPCYsSKASRgGLRVcDL yspeh PURA_DICDI : 130- 154: sndsi G-TtkrGIgPCYsSKASRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GtTgr-GIgPAYeDKVARrGLRVgDL fdket PURA_ECOLI : 127- 151: gakai G-TtgrGIgPAYeDKVARrGLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GtTgr-GIgPAYeDKVARrGLRVgDL fnkea PURA_HAEIN : 127- 151: gkkai G-TtgrGIgPAYeDKVARrGLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GtTkk-GIgPVYsSKAARsGLRMcDL vsdfd PURA_HUMAN : 159- 183: agknl G-TtkkGIgPVYsSKAARsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GtTgk-GIgPAYsTKATRsGIRVhHL yhwae PURA_SCHPO : 140- 164: gkqsi G-TtgkGIgPAYsTKATRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GtTgr-GIgPAYeDKVARrGLRVgDL fdmea PURA_VIBPA : 128- 152: gkkai G-TtgrGIgPAYeDKVARrGLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GtTgk-GIgPTYsTKASRsGLRVhHL vndqp PURA_YEAST : 131- 155: dgkni G-TtgkGIgPTYsTKASRsGLRVhHL vndqp O 15: 64.7809 10( 10) G-x(0,1)-T-x(1,2)-G-I-x-P-[ACTV]-Y-x-[DST]-K-[AV]-[AST]-R-x-G-[IL]-R-[IMV]-x-[DH]-L Occurences: 10(10) PUA1_MOUSE : 161- 185: egkni GtTkkGIgPTYsSKAARtGLRIcDL lsdfd PUA2_MOUSE : 160- 184: agknl GtTkkGIrPVYsSKAARsGLRMcDL vsdfd PURA_BACSU : 126- 150: ganki GtTkkGIgPAYmDKAARiGIRIaDL ldrda PURA_DICDI : 130- 154: sndsi GtTkrGIgPCYsSKASRgGLRVcDL yspeh PURA_ECOLI : 127- 151: gakai GtTgrGIgPAYeDKVARrGLRVgDL fdket PURA_HAEIN : 127- 151: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fnkea PURA_HUMAN : 159- 183: agknl GtTkkGIgPVYsSKAARsGLRMcDL vsdfd PURA_SCHPO : 140- 164: gkqsi GtTgkGIgPAYsTKATRsGIRVhHL yhwae PURA_VIBPA : 128- 152: gkkai GtTgrGIgPAYeDKVARrGLRVgDL fdmea PURA_YEAST : 131- 155: dgkni GtTgkGIgPTYsTKASRsGLRVhHL vndqp P 16: 64.5617 10( 10) G-x(2)-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Occurences: 10(10) PUA1_MOUSE : 296- 319: igdvy GvvKAYTTRVGiGAFPTEqiNeiG dllqn PUA2_MOUSE : 295- 318: vgevy GvvKAYTTRVGiGAFPTEqdNeiG ellqt PURA_BACSU : 263- 286: ikhvv GvsKAYTTRVGdGPFPTElkDeiG dqire PURA_DICDI : 263- 286: vvtqi GvvKAYTTKVGsGPFPTEqnDhvG dslrk PURA_ECOLI : 264- 287: vdyvl GilKAYSTRVGaGPFPTElfDetG eflck PURA_HAEIN : 264- 287: ldyvl GiiKAYCTRVGgGPFTTElfDdvG aeiar PURA_HUMAN : 294- 317: vgevy GvvKAYTTRVGiGAFPTEqdNeiG ellqt PURA_SCHPO : 273- 296: iansi GvvKAYTTRVGaGPFPTEqlNeiG dhlqs PURA_VIBPA : 265- 288: igyil GiaKAYCTRVGaGPFPTElyDglE kqdpv PURA_YEAST : 269- 292: ideiy GvvKAYTTRVGeGPFPTEqlNenG eklqt Q 17: 64.0617 10( 10) G-x(1,2)-K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Occurences: 10(10) PUA1_MOUSE : 296- 319: igdvy GvvKAYTTRVGiGAFPTEqiNeiG dllqn PUA2_MOUSE : 295- 318: vgevy GvvKAYTTRVGiGAFPTEqdNeiG ellqt PURA_BACSU : 263- 286: ikhvv GvsKAYTTRVGdGPFPTElkDeiG dqire PURA_DICDI : 263- 286: vvtqi GvvKAYTTKVGsGPFPTEqnDhvG dslrk PURA_ECOLI : 264- 287: vdyvl GilKAYSTRVGaGPFPTElfDetG eflck PURA_HAEIN : 264- 287: ldyvl GiiKAYCTRVGgGPFTTElfDdvG aeiar PURA_HUMAN : 294- 317: vgevy GvvKAYTTRVGiGAFPTEqdNeiG ellqt PURA_SCHPO : 273- 296: iansi GvvKAYTTRVGaGPFPTEqlNeiG dhlqs PURA_VIBPA : 265- 288: igyil GiaKAYCTRVGaGPFPTElyDglE kqdpv PURA_YEAST : 269- 292: ideiy GvvKAYTTRVGeGPFPTEqlNenG eklqt R 18: 60.8929 10( 10) G-[IV]-x-K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Occurences: 10(10) PUA1_MOUSE : 296- 319: igdvy GVvKAYtTr-VGiGAFPTEqiNeiG dllqn PUA1_MOUSE : 296- 319: igdvy GVvKAY-TtrVGiGAFPTEqiNeiG dllqn PUA2_MOUSE : 295- 318: vgevy GVvKAYtTr-VGiGAFPTEqdNeiG ellqt PUA2_MOUSE : 295- 318: vgevy GVvKAY-TtrVGiGAFPTEqdNeiG ellqt PURA_BACSU : 263- 286: ikhvv GVsKAYtTr-VGdGPFPTElkDeiG dqire PURA_BACSU : 263- 286: ikhvv GVsKAY-TtrVGdGPFPTElkDeiG dqire PURA_DICDI : 263- 286: vvtqi GVvKAYtTk-VGsGPFPTEqnDhvG dslrk PURA_DICDI : 263- 286: vvtqi GVvKAY-TtkVGsGPFPTEqnDhvG dslrk PURA_ECOLI : 264- 287: vdyvl GIlKAYsTr-VGaGPFPTElfDetG eflck PURA_HAEIN : 264- 287: ldyvl GIiKAYcTr-VGgGPFTTElfDdvG aeiar PURA_HUMAN : 294- 317: vgevy GVvKAYtTr-VGiGAFPTEqdNeiG ellqt PURA_HUMAN : 294- 317: vgevy GVvKAY-TtrVGiGAFPTEqdNeiG ellqt PURA_SCHPO : 273- 296: iansi GVvKAYtTr-VGaGPFPTEqlNeiG dhlqs PURA_SCHPO : 273- 296: iansi GVvKAY-TtrVGaGPFPTEqlNeiG dhlqs PURA_VIBPA : 265- 288: igyil GIaKAYcTr-VGaGPFPTElyDglE kqdpv PURA_YEAST : 269- 292: ideiy GVvKAYtTr-VGeGPFPTEqlNenG eklqt PURA_YEAST : 269- 292: ideiy GVvKAY-TtrVGeGPFPTEqlNenG eklqt S 19: 60.3916 10( 10) K-A-Y-[CST]-T-[KR]-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Occurences: 10(10) PUA1_MOUSE : 299- 319: vygvv KAYTTRVGiGAFPTEqiNeiG dllqn PUA2_MOUSE : 298- 318: vygvv KAYTTRVGiGAFPTEqdNeiG ellqt PURA_BACSU : 266- 286: vvgvs KAYTTRVGdGPFPTElkDeiG dqire PURA_DICDI : 266- 286: qigvv KAYTTKVGsGPFPTEqnDhvG dslrk PURA_ECOLI : 267- 287: vlgil KAYSTRVGaGPFPTElfDetG eflck PURA_HAEIN : 267- 287: vlgii KAYCTRVGgGPFTTElfDdvG aeiar PURA_HUMAN : 297- 317: vygvv KAYTTRVGiGAFPTEqdNeiG ellqt PURA_SCHPO : 276- 296: sigvv KAYTTRVGaGPFPTEqlNeiG dhlqs PURA_VIBPA : 268- 288: ilgia KAYCTRVGaGPFPTElyDglE kqdpv PURA_YEAST : 272- 292: iygvv KAYTTRVGeGPFPTEqlNenG eklqt T 20: 53.4980 10( 10) K-A-Y-x(0,1)-T-x(1,2)-V-G-x-G-[AP]-F-[PT]-T-E-x(2)-[DN]-x(2)-[EG] Occurences: 10(10) PUA1_MOUSE : 299- 319: vygvv KAYtTr-VGiGAFPTEqiNeiG dllqn PUA1_MOUSE : 299- 319: vygvv KAY-TtrVGiGAFPTEqiNeiG dllqn PUA2_MOUSE : 298- 318: vygvv KAYtTr-VGiGAFPTEqdNeiG ellqt PUA2_MOUSE : 298- 318: vygvv KAY-TtrVGiGAFPTEqdNeiG ellqt PURA_BACSU : 266- 286: vvgvs KAYtTr-VGdGPFPTElkDeiG dqire PURA_BACSU : 266- 286: vvgvs KAY-TtrVGdGPFPTElkDeiG dqire PURA_DICDI : 266- 286: qigvv KAYtTk-VGsGPFPTEqnDhvG dslrk PURA_DICDI : 266- 286: qigvv KAY-TtkVGsGPFPTEqnDhvG dslrk PURA_ECOLI : 267- 287: vlgil KAYsTr-VGaGPFPTElfDetG eflck PURA_HAEIN : 267- 287: vlgii KAYcTr-VGgGPFTTElfDdvG aeiar PURA_HUMAN : 297- 317: vygvv KAYtTr-VGiGAFPTEqdNeiG ellqt PURA_HUMAN : 297- 317: vygvv KAY-TtrVGiGAFPTEqdNeiG ellqt PURA_SCHPO : 276- 296: sigvv KAYtTr-VGaGPFPTEqlNeiG dhlqs PURA_SCHPO : 276- 296: sigvv KAY-TtrVGaGPFPTEqlNeiG dhlqs PURA_VIBPA : 268- 288: ilgia KAYcTr-VGaGPFPTElyDglE kqdpv PURA_YEAST : 272- 292: iygvv KAYtTr-VGeGPFPTEqlNenG eklqt PURA_YEAST : 272- 292: iygvv KAY-TtrVGeGPFPTEqlNenG eklqt Number of patterns evaluated by Pratt:21601 Total running time: 12 seconds