------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file ACYLTRANSF_C_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ACYLTRANSF_C_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CACM_YEAST 688 CACP_HUMAN 605 CACP_YEAST 670 CLAT_CAEEL 627 CLAT_DROME 720 CLAT_HUMAN 748 CLAT_MOUSE 640 CLAT_PIG 640 CLAT_RAT 639 CPT1_RAT 773 CPT2_HUMAN 658 CPT2_RAT 658 OCTC_RAT 591 YEL4_YEAST 923 Pratt run started at Thu Feb 6 18:29:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 15( 14) L-x(0,1)-S-x(0,1)-T-S 2: 15.1802 16( 14) P-x(2)-P-x(1,2)-P-x(1,3)-L 3: 12.5102 21( 14) L-P-x-P 4: 12.5102 15( 14) P-D-x(3)-Q 5: 12.5102 19( 14) L-x(3)-L-x(3)-L 6: 12.5102 15( 14) L-x(3)-P-x-P 7: 12.0102 18( 14) S-x(0,1)-T-S 8: 12.0102 21( 14) L-S-x(0,1)-S 9: 12.0102 21( 14) L-x(0,1)-S-T 10: 12.0102 22( 14) G-x(4)-L-x(2,3)-L 11: 12.0102 27( 14) L-x(0,1)-S-x-S 12: 12.0102 24( 14) L-x(3,4)-P-L 13: 12.0102 27( 14) P-x-L-x(2,3)-P 14: 12.0102 25( 14) P-x-P-x(1,2)-L 15: 12.0102 19( 14) L-x(2,3)-L-x(2)-A 16: 12.0102 21( 14) D-x(1,2)-L-x(2)-L 17: 12.0102 18( 14) L-x(3)-Q-x(3,4)-L 18: 12.0102 17( 14) G-x(1,2)-G-x(2)-Y 19: 12.0102 23( 14) L-x(3)-L-x(3,4)-L 20: 12.0102 21( 14) Q-L-x(3,4)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 28.4560 14( 14) L-x(2)-[LPV]-P-[ILV]-P-x-[LV]-x-[ADEQS]-[ST]-[ILMV] B 2: 25.9126 14( 14) P-D-[ADGSTV]-x-[AIV]-Q-x-[AIV]-x-[AQ]-x-[AG] C 3: 19.7011 15( 14) P-x-[GILPV]-P-x(1,2)-P-x(1,3)-L-x(2)-[DST] D 4: 17.5025 14( 14) P-x-P-x(1,2)-L-x(2)-[DST]-[ILM] E 5: 15.6802 15( 14) L-x(0,1)-S-x(0,1)-T-S F 6: 14.6588 15( 14) L-[CDS]-x(2)-Q-x(3,4)-L G 7: 14.3927 21( 14) L-P-x-P-x(3)-[DEQRS] H 8: 14.2835 17( 14) L-x(0,1)-S-T-[ACNS] I 9: 13.9096 14( 14) S-x(0,1)-T-S-x(2)-[GNPST] J 10: 13.6493 25( 14) L-x(0,1)-S-x-S-x(2)-[AGNPST] K 11: 12.5102 19( 14) L-x(3)-L-x(3)-L L 12: 12.0102 21( 14) L-S-x(0,1)-S M 13: 12.0102 22( 14) G-x(4)-L-x(2,3)-L N 14: 12.0102 24( 14) L-x(3,4)-P-L O 15: 12.0102 27( 14) P-x-L-x(2,3)-P P 16: 12.0102 19( 14) L-x(2,3)-L-x(2)-A Q 17: 12.0102 21( 14) D-x(1,2)-L-x(2)-L R 18: 12.0102 17( 14) G-x(1,2)-G-x(2)-Y S 19: 12.0102 23( 14) L-x(3)-L-x(3,4)-L T 20: 12.0102 21( 14) Q-L-x(3,4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 28.4560 14( 14) L-x(2)-[LPV]-P-[ILV]-P-x-[LV]-x-[ADEQS]-[ST]-[ILMV] Occurences: 14(14) CACM_YEAST : 4- 16: mpn LkrLPIPpLqDTL nryla CACP_HUMAN : 14- 26: ahqda LprLPVPpLqQSL dhylk CACP_YEAST : 74- 86: akqqd LpsLPVPeLkSTL dkylq CLAT_CAEEL : 20- 32: wyeta LpkPPVPsLeATL dryle CLAT_DROME : 88- 100: gfpdt LpkVPVPaLdETM adyir CLAT_HUMAN : 131- 143: seesg LpkLPVPpLqQTL atylq CLAT_MOUSE : 23- 35: eevld LpkLPVPpLqQTL atylq CLAT_PIG : 23- 35: eeepg LpkLPVPpLqQTL atylr CLAT_RAT : 22- 34: weeld LpkLPVPpLqQTL atylq CPT1_RAT : 171- 183: sfqts LprLPVPaVkDTV sryle CPT2_HUMAN : 49- 61: hyqds LprLPIPkLeDTI rryls CPT2_RAT : 49- 61: hyqds LprLPIPkLeDTM kryln OCTC_RAT : 60- 72: qyqds LppLPVPsLeESL kkyle YEL4_YEAST : 23- 35: kheee LpkLPLPkLcDTL qrlke B 2: 25.9126 14( 14) P-D-[ADGSTV]-x-[AIV]-Q-x-[AIV]-x-[AQ]-x-[AG] Occurences: 14(14) CACM_YEAST : 459- 470: vfkcs PDAfVQqVfQvA yfaly CACP_HUMAN : 408- 419: sekls PDAfIQmAlQlA yyriy CACP_YEAST : 471- 482: rhgms PDAfIQqViQlA vfkyl CLAT_CAEEL : 429- 440: nwrvs PDGfIQlImQlA hykth CLAT_DROME : 506- 517: scqvs PDVyIQlAtAtG slqvv CLAT_HUMAN : 531- 542: kqkcs PDAfIQvAlQlA fyrlh CLAT_MOUSE : 423- 434: kqkcs PDGfIQvAlQlA yyrly CLAT_PIG : 423- 434: qqkcs PDAfIQvAlQlA fyrlh CLAT_RAT : 422- 433: kqkys PDGfIQvAlQlA yyrly CPT1_RAT : 566- 577: kcrts PDAfIQlAlQlA hykdm CPT2_HUMAN : 463- 474: kqkls PDAvAQlAfQmA flrqy CPT2_RAT : 463- 474: kkqls PDAvAQlAfQmA flrqy OCTC_RAT : 456- 467: kealh PDTfIQlAlQlA yyrlh YEL4_YEAST : 540- 551: rlgvk PDSmVQvAlQiA hyaly C 3: 19.7011 15( 14) P-x-[GILPV]-P-x(1,2)-P-x(1,3)-L-x(2)-[DST] Occurences: 15(14) CACM_YEAST : 170- 183: gssri PpGPgePschLqtD atshh CACP_HUMAN : 15- 25: hqdal PrLPv-Pp--LqqS ldhyl CACP_YEAST : 75- 85: kqqdl PsLPv-Pe--LksT ldkyl CLAT_CAEEL : 21- 31: yetal PkPPv-Ps--LeaT ldryl CLAT_DROME : 89- 99: fpdtl PkVPv-Pa--LdeT madyi CLAT_HUMAN : 132- 142: eesgl PkLPv-Pp--LqqT latyl CLAT_MOUSE : 24- 34: evldl PkLPv-Pp--LqqT latyl CLAT_PIG : 21- 34: sseee PgLPklPvppLqqT latyl CLAT_PIG : 24- 34: eepgl PkLPv-Pp--LqqT latyl CLAT_RAT : 23- 33: eeldl PkLPv-Pp--LqqT latyl CPT1_RAT : 510- 521: kgdtn PnIPk-Ptr-LqwD ipgec CPT2_HUMAN : 50- 60: yqdsl PrLPi-Pk--LedT irryl CPT2_RAT : 50- 60: yqdsl PrLPi-Pk--LedT mkryl OCTC_RAT : 61- 71: yqdsl PpLPv-Ps--LeeS lkkyl YEL4_YEAST : 24- 34: heeel PkLPl-Pk--LcdT lqrlk D 4: 17.5025 14( 14) P-x-P-x(1,2)-L-x(2)-[DST]-[ILM] Occurences: 14(14) CACM_YEAST : 8- 16: nlkrl PiPp-LqdTL nryla CACP_HUMAN : 18- 26: alprl PvPp-LqqSL dhylk CACP_YEAST : 78- 86: dlpsl PvPe-LksTL dkylq CLAT_CAEEL : 24- 32: alpkp PvPs-LeaTL dryle CLAT_DROME : 92- 100: tlpkv PvPa-LdeTM adyir CLAT_HUMAN : 135- 143: glpkl PvPp-LqqTL atylq CLAT_MOUSE : 27- 35: dlpkl PvPp-LqqTL atylq CLAT_PIG : 27- 35: glpkl PvPp-LqqTL atylr CLAT_RAT : 26- 34: dlpkl PvPp-LqqTL atylq CPT1_RAT : 513- 522: tnpni PkPtrLqwDI pgecq CPT2_HUMAN : 53- 61: slprl PiPk-LedTI rryls CPT2_RAT : 53- 61: slprl PiPk-LedTM kryln OCTC_RAT : 64- 72: slppl PvPs-LeeSL kkyle YEL4_YEAST : 27- 35: elpkl PlPk-LcdTL qrlke E 5: 15.6802 15( 14) L-x(0,1)-S-x(0,1)-T-S Occurences: 15(14) CACM_YEAST : 584- 587: mqnnv L-S-TS ncgnp CACP_HUMAN : 530- 533: amhfh L-S-TS qvpak CACP_YEAST : 592- 596: ysstw LiS-TS qlsse CLAT_CAEEL : 555- 558: vmrfp L-S-TS qvtts CLAT_DROME : 650- 654: csqcn LlS-TS qvacs CLAT_DROME : 651- 654: sqcnl L-S-TS qvacs CLAT_HUMAN : 655- 658: snrfv L-S-TS qvptt CLAT_MOUSE : 547- 550: snrfi L-S-TS qvptt CLAT_PIG : 547- 550: snrfv L-S-TS qvptt CLAT_RAT : 546- 549: snrfv L-S-TS qvptt CPT1_RAT : 684- 687: sepwr L-S-TS qtpqq CPT2_HUMAN : 587- 590: inhnv L-S-TS tlssp CPT2_RAT : 587- 590: mnhni L-S-TS tlnsp OCTC_RAT : 581- 584: ggnfv L-S-TS lvgfn YEL4_YEAST : 300- 305: eksta LgSlTS hsfrn F 6: 14.6588 15( 14) L-[CDS]-x(2)-Q-x(3,4)-L Occurences: 15(14) CACM_YEAST : 155- 163: rgktp LSmdQyer-L fgssr CACM_YEAST : 306- 315: tstin LDphQhqppL nvqtg CACP_HUMAN : 147- 156: lggkp LCmnQyyqiL sscrv CACP_YEAST : 332- 341: sfmlc LDldQspvtL eeksr CLAT_CAEEL : 555- 564: vmrfp LStsQvttsL dipdc CLAT_DROME : 224- 232: eknqp LCmaQyyr-L lgscr CLAT_DROME : 224- 233: eknqp LCmaQyyrlL gscrr CLAT_HUMAN : 268- 276: lsgqp LCmkQyyg-L fssyr CLAT_MOUSE : 160- 168: lsgqp LCmkQyyr-L fssyr CLAT_PIG : 160- 168: lsgqp LCmkQyyg-L fssyr CLAT_RAT : 159- 167: lsgqp LCmkQyyr-L fssyr CPT1_RAT : 303- 311: gstip LCsaQwer-L fntsr CPT2_HUMAN : 212- 220: vnayp LDmsQyfr-L fnstr CPT2_RAT : 212- 220: vnayp LDmsQyfr-L fnstr OCTC_RAT : 194- 202: sgntp LDmnQfrm-L fstck YEL4_YEAST : 56- 64: yyqhp LDpeQiek-L ssiir G 7: 14.3927 21( 14) L-P-x-P-x(3)-[DEQRS] Occurences: 21(14) CACM_YEAST : 7- 14: pnlkr LPiPplqD tlnry CACP_HUMAN : 17- 24: dalpr LPvPplqQ sldhy CACP_HUMAN : 354- 361: spmvp LPmPkklR fnitp CACP_YEAST : 77- 84: qdlps LPvPelkS tldky CLAT_CAEEL : 20- 27: wyeta LPkPpvpS leatl CLAT_DROME : 452- 459: lpqhh LPpPerlE whvgp CLAT_HUMAN : 134- 141: sglpk LPvPplqQ tlaty CLAT_HUMAN : 477- 484: dsvse LPaPrrlR wkcsp CLAT_MOUSE : 26- 33: ldlpk LPvPplqQ tlaty CLAT_MOUSE : 369- 376: dsvse LPaPrrlR wkcsp CLAT_PIG : 26- 33: pglpk LPvPplqQ tlaty CLAT_PIG : 369- 376: dsvse LPaPrrlR wkcsp CLAT_RAT : 25- 32: ldlpk LPvPplqQ tlaty CLAT_RAT : 368- 375: dsvse LPaPrrlR lkcsp CPT1_RAT : 174- 181: tslpr LPvPavkD tvsry CPT2_HUMAN : 52- 59: dslpr LPiPkleD tirry CPT2_HUMAN : 226- 233: fnstr LPkPsrdE lftdd CPT2_RAT : 52- 59: dslpr LPiPkleD tmkry OCTC_RAT : 63- 70: dslpp LPvPsleE slkky OCTC_RAT : 559- 566: akeeg LPvPelfE dplfs YEL4_YEAST : 26- 33: eelpk LPlPklcD tlqrl H 8: 14.2835 17( 14) L-x(0,1)-S-T-[ACNS] Occurences: 17(14) CACM_YEAST : 584- 587: mqnnv L-STS ncgnp CACP_HUMAN : 530- 533: amhfh L-STS qvpak CACP_YEAST : 592- 596: ysstw LiSTS qlsse CLAT_CAEEL : 555- 558: vmrfp L-STS qvtts CLAT_DROME : 73- 76: ipkkw L-STA esvde CLAT_DROME : 650- 654: csqcn LlSTS qvacs CLAT_DROME : 651- 654: sqcnl L-STS qvacs CLAT_HUMAN : 655- 658: snrfv L-STS qvptt CLAT_MOUSE : 547- 550: snrfi L-STS qvptt CLAT_PIG : 547- 550: snrfv L-STS qvptt CLAT_RAT : 546- 549: snrfv L-STS qvptt CPT1_RAT : 684- 687: sepwr L-STS qtpqq CPT2_HUMAN : 587- 590: inhnv L-STS tlssp CPT2_RAT : 587- 590: mnhni L-STS tlnsp OCTC_RAT : 202- 206: nqfrm LfSTC kvpgi OCTC_RAT : 581- 584: ggnfv L-STS lvgfn YEL4_YEAST : 267- 271: ytlev LdSTN kiiyt I 9: 13.9096 14( 14) S-x(0,1)-T-S-x(2)-[GNPST] Occurences: 14(14) CACM_YEAST : 585- 590: qnnvl S-TSncG npclk CACP_HUMAN : 531- 536: mhfhl S-TSqvP aktdc CACP_YEAST : 594- 599: stwli S-TSqlS seyfd CLAT_CAEEL : 556- 561: mrfpl S-TSqvT tsldi CLAT_DROME : 7- 12: asnea S-TSaaG sgpes CLAT_HUMAN : 656- 661: nrfvl S-TSqvP tttem CLAT_MOUSE : 548- 553: nrfil S-TSqvP ttmem CLAT_PIG : 548- 553: nrfvl S-TSqvP ttmem CLAT_RAT : 547- 552: nrfvl S-TSqvP ttmem CPT1_RAT : 685- 690: epwrl S-TSqtP qqqve CPT2_HUMAN : 588- 593: nhnvl S-TStlS spavn CPT2_RAT : 588- 593: nhnil S-TStlN spavs OCTC_RAT : 582- 587: gnfvl S-TSlvG fnty YEL4_YEAST : 889- 895: sssas SaTSlnS kkrnv J 10: 13.6493 25( 14) L-x(0,1)-S-x-S-x(2)-[AGNPST] Occurences: 25(14) CACM_YEAST : 584- 590: mqnnv L-StSncG npclk CACP_HUMAN : 530- 536: amhfh L-StSqvP aktdc CACP_YEAST : 592- 599: ysstw LiStSqlS seyfd CLAT_CAEEL : 555- 561: vmrfp L-StSqvT tsldi CLAT_DROME : 24- 31: alfsk LrSfSigS gpnsp CLAT_DROME : 282- 288: sdrgk L-SeSeiA sqily CLAT_DROME : 650- 657: csqcn LlStSqvA cstds CLAT_DROME : 651- 657: sqcnl L-StSqvA cstds CLAT_HUMAN : 249- 256: sykal LdShSipT dcakp CLAT_HUMAN : 655- 661: snrfv L-StSqvP tttem CLAT_MOUSE : 141- 148: sykal LdSqSipT dwakg CLAT_MOUSE : 547- 553: snrfi L-StSqvP ttmem CLAT_PIG : 547- 553: snrfv L-StSqvP ttmem CLAT_PIG : 613- 620: iemkg LcSlSqsG mgkpl CLAT_PIG : 616- 622: kglcs L-SqSgmG kplat CLAT_RAT : 140- 147: syktl LdShSlpT dwakg CLAT_RAT : 546- 552: snrfv L-StSqvP ttmem CPT1_RAT : 534- 541: vidas LsSaSllA ndvdl CPT1_RAT : 684- 690: sepwr L-StSqtP qqqve CPT2_HUMAN : 277- 283: hlkyi L-SdSspA pefpl CPT2_HUMAN : 587- 593: inhnv L-StStlS spavn CPT2_RAT : 587- 593: mnhni L-StStlN spavs OCTC_RAT : 569- 576: lfedp LfSrSggG gnfvl OCTC_RAT : 581- 587: ggnfv L-StSlvG fnty YEL4_YEAST : 303- 310: talgs LtShSfrN wkyar K 11: 12.5102 19( 14) L-x(3)-L-x(3)-L Occurences: 19(14) CACM_YEAST : 12- 20: lpipp LqdtLnryL arvet CACP_HUMAN : 22- 30: lpvpp LqqsLdhyL kalqp CACP_HUMAN : 582- 590: tnaar LahyLekaL ldmra CACP_YEAST : 82- 90: lpvpe LkstLdkyL qtirp CLAT_CAEEL : 28- 36: ppvps LeatLdryL eyaav CLAT_DROME : 43- 51: rvvsn LrgfLthrL snitp CLAT_HUMAN : 139- 147: lpvpp LqqtLatyL qcmrh CLAT_HUMAN : 175- 183: gapgg LgetLqqkL lerqe CLAT_MOUSE : 31- 39: lpvpp LqqtLatyL qcmqh CLAT_MOUSE : 67- 75: gapgg LgetLqekL lerqe CLAT_PIG : 31- 39: lpvpp LqqtLatyL rcmqh CLAT_PIG : 67- 75: gapgg LgetLqqkL lerqe CLAT_RAT : 30- 38: lpvpp LqqtLatyL qcmqh CLAT_RAT : 66- 74: gapgg LgetLqekL lerqe CPT1_RAT : 213- 221: dfavn LgpkLqwyL klksw CPT2_HUMAN : 415- 423: vtvqk LnfeLtdaL ktgit CPT2_RAT : 415- 423: asvet LsfnLsgaL kagit OCTC_RAT : 68- 76: lpvps LeesLkkyL esvkp YEL4_YEAST : 721- 729: rqgdr LmfmLswvL geirs L 12: 12.0102 21( 14) L-S-x(0,1)-S Occurences: 21(14) CACM_YEAST : 584- 587: mqnnv LStS ncgnp CACP_HUMAN : 156- 158: qyyqi LS-S crvpg CACP_HUMAN : 530- 533: amhfh LStS qvpak CACP_YEAST : 598- 600: istsq LS-S eyfdg CLAT_CAEEL : 555- 558: vmrfp LStS qvtts CLAT_DROME : 282- 285: sdrgk LSeS eiasq CLAT_DROME : 651- 654: sqcnl LStS qvacs CLAT_HUMAN : 655- 658: snrfv LStS qvptt CLAT_MOUSE : 547- 550: snrfi LStS qvptt CLAT_PIG : 547- 550: snrfv LStS qvptt CLAT_PIG : 616- 619: kglcs LSqS gmgkp CLAT_RAT : 546- 549: snrfv LStS qvptt CPT1_RAT : 534- 536: vidas LS-S aslla CPT1_RAT : 684- 687: sepwr LStS qtpqq CPT2_HUMAN : 277- 280: hlkyi LSdS spape CPT2_HUMAN : 587- 590: inhnv LStS tlssp CPT2_HUMAN : 592- 594: lstst LS-S pavnl CPT2_RAT : 277- 280: hlkyi LSdS spvpe CPT2_RAT : 587- 590: mnhni LStS tlnsp OCTC_RAT : 581- 584: ggnfv LStS lvgfn YEL4_YEAST : 64- 66: eqiek LS-S iirdf M 13: 12.0102 22( 14) G-x(4)-L-x(2,3)-L Occurences: 22(14) CACM_YEAST : 545- 553: csqgl GqdrhLya-L yclwn CACP_HUMAN : 57- 66: fqasg GvgerLqkgL grrar CACP_YEAST : 290- 298: sdpkl GgigsLts-L prdqw CLAT_CAEEL : 515- 523: nisgy GvdnhLca-L fclar CLAT_DROME : 131- 140: fsapq GigarLhqyL ldkre CLAT_HUMAN : 170- 179: ivqqf GapggLgetL qqkll CLAT_HUMAN : 174- 183: fgapg GlgetLqqkL lerqe CLAT_MOUSE : 62- 71: ivkrf GapggLgetL qekll CLAT_MOUSE : 66- 75: fgapg GlgetLqekL lerqe CLAT_PIG : 62- 71: ivqqf GapggLgetL qqkll CLAT_PIG : 66- 75: fgapg GlgetLqqkL lerqe CLAT_RAT : 61- 70: ivkrf GapggLgetL qekll CLAT_RAT : 65- 74: fgapg GlgetLqekL lerqe CPT1_RAT : 652- 660: amtga GidrhLfc-L yvvsk CPT2_HUMAN : 90- 99: ksfen GigkeLheqL valdk CPT2_HUMAN : 551- 559: aamgq GfdrhLfa-L rhlaa CPT2_RAT : 90- 99: knfet GvgkeLhahL laqdk CPT2_RAT : 551- 559: aamgq GfdrhLya-L rylat OCTC_RAT : 101- 110: qkfqd GvgktLhqkL lerak OCTC_RAT : 542- 550: cshgk GfdrhLlg-L lliak OCTC_RAT : 542- 551: cshgk GfdrhLlglL liake OCTC_RAT : 576- 585: srsgg GgnfvLstsL vgfnt YEL4_YEAST : 259- 267: liisr GqyytLev-L dstnk N 14: 12.0102 24( 14) L-x(3,4)-P-L Occurences: 24(14) CACM_YEAST : 7- 12: pnlkr Lpip-PL qdtln CACP_HUMAN : 17- 22: dalpr Lpvp-PL qqsld CACP_HUMAN : 142- 147: lpvey Lggk-PL cmnqy CACP_YEAST : 579- 584: dqipp Lfkd-PL fnyss CLAT_CAEEL : 541- 546: edips Lfld-PL wsevm CLAT_DROME : 346- 352: taqvv LcldePL agnfn CLAT_HUMAN : 134- 139: sglpk Lpvp-PL qqtla CLAT_HUMAN : 263- 268: cakpe Lsgq-PL cmkqy CLAT_MOUSE : 26- 31: ldlpk Lpvp-PL qqtla CLAT_MOUSE : 155- 160: wakgq Lsgq-PL cmkqy CLAT_PIG : 26- 31: pglpk Lpvp-PL qqtla CLAT_PIG : 155- 160: cakgq Lsgq-PL cmkqy CLAT_RAT : 25- 30: ldlpk Lpvp-PL qqtla CLAT_RAT : 154- 159: wakgq Lsgq-PL cmkqy CPT1_RAT : 187- 193: tvsry LesvrPL mkeed CPT1_RAT : 242- 248: eeyiy LrgrgPL mvnsn CPT1_RAT : 297- 303: kpirl LgstiPL csaqw CPT2_HUMAN : 65- 71: tirry LsaqkPL lndgq CPT2_HUMAN : 206- 212: wygay LvnayPL dmsqy CPT2_RAT : 65- 71: tmkry LnaqkPL lddsq CPT2_RAT : 206- 212: wygay LvnayPL dmsqy OCTC_RAT : 564- 569: lpvpe Lfed-PL fsrsg YEL4_YEAST : 23- 28: kheee Lpkl-PL pklcd YEL4_YEAST : 659- 664: saakd Lfen-PL vlpfs O 15: 12.0102 27( 14) P-x-L-x(2,3)-P Occurences: 27(14) CACM_YEAST : 2- 8: m PnLkrlP ipplq CACP_HUMAN : 15- 20: hqdal PrLpv-P plqqs CACP_HUMAN : 15- 21: hqdal PrLpvpP lqqsl CACP_HUMAN : 344- 350: eytkk PeLvrsP mvplp CACP_YEAST : 75- 80: kqqdl PsLpv-P elkst CACP_YEAST : 577- 583: nddqi PpLfkdP lfnys CLAT_CAEEL : 539- 545: tgedi PsLfldP lwsev CLAT_DROME : 299- 305: vlsda PcLpakP vpvgl CLAT_HUMAN : 97- 102: prrag PhLci-P apglt CLAT_HUMAN : 104- 110: lcipa PgLtktP ilekv CLAT_HUMAN : 110- 116: gltkt PiLekvP rkmaa CLAT_HUMAN : 132- 137: eesgl PkLpv-P plqqt CLAT_HUMAN : 132- 138: eesgl PkLpvpP lqqtl CLAT_HUMAN : 261- 267: tdcak PeLsgqP lcmkq CLAT_MOUSE : 1- 7: PiLekvP pkmpv CLAT_MOUSE : 24- 29: evldl PkLpv-P plqqt CLAT_MOUSE : 24- 30: evldl PkLpvpP lqqtl CLAT_PIG : 1- 7: PiLektP pkmaa CLAT_PIG : 21- 27: sseee PgLpklP vpplq CLAT_PIG : 24- 29: eepgl PkLpv-P plqqt CLAT_PIG : 24- 30: eepgl PkLpvpP lqqtl CLAT_RAT : 1- 7: PiLekaP qkmpv CLAT_RAT : 23- 28: eeldl PkLpv-P plqqt CLAT_RAT : 23- 29: eeldl PkLpvpP lqqtl CPT1_RAT : 172- 177: fqtsl PrLpv-P avkdt CPT2_HUMAN : 50- 55: yqdsl PrLpi-P kledt CPT2_HUMAN : 571- 577: kgiil PeLyldP aygqi CPT2_RAT : 50- 55: yqdsl PrLpi-P kledt CPT2_RAT : 571- 577: rglnl PeLyldP ayqqm OCTC_RAT : 61- 66: yqdsl PpLpv-P slees OCTC_RAT : 562- 568: eglpv PeLfedP lfsrs YEL4_YEAST : 24- 29: heeel PkLpl-P klcdt P 16: 12.0102 19( 14) L-x(2,3)-L-x(2)-A Occurences: 19(14) CACM_YEAST : 418- 425: rtdnf LqssLhfA etris CACP_HUMAN : 111- 118: qdfvd LqgqLrfA aklie CACP_HUMAN : 582- 589: tnaar LahyLekA lldmr CACP_YEAST : 645- 652: asvnr LhyyLsqA adeif CLAT_CAEEL : 32- 39: sleat LdryLeyA avvav CLAT_DROME : 292- 298: iasqi Lyv-LsdA pclpa CLAT_HUMAN : 597- 603: pasek Lll-LkdA iraqt CLAT_HUMAN : 627- 633: nhlla Lre-LarA mckel CLAT_MOUSE : 489- 495: lasek Lql-LqrA iqaqt CLAT_PIG : 489- 495: pdsek Lll-LkdA iraqt CLAT_RAT : 488- 494: pasek Lql-LqtA mqahk CPT1_RAT : 380- 386: pgeak Laa-LtaA drvpw CPT2_HUMAN : 415- 422: vtvqk LnfeLtdA lktgi CPT2_HUMAN : 559- 565: rhlfa Lrh-LaaA kgiil CPT2_RAT : 415- 422: asvet LsfnLsgA lkagi CPT2_RAT : 559- 565: rhlya Lry-LatA rglnl OCTC_RAT : 547- 554: gfdrh LlglLliA keegl OCTC_RAT : 548- 554: fdrhl Lgl-LliA keegl YEL4_YEAST : 42- 48: rlkes Lep-LyyA dgyyq Q 17: 12.0102 21( 14) D-x(1,2)-L-x(2)-L Occurences: 21(14) CACM_YEAST : 46- 51: saenl Da-LntL herll CACM_YEAST : 547- 553: qglgq DrhLyaL yclwn CACP_HUMAN : 12- 17: fkahq Da-LprL pvppl CACP_HUMAN : 27- 33: lqqsl DhyLkaL qpivs CACP_YEAST : 359- 365: inrfy DksLqfL vtgng CLAT_CAEEL : 517- 523: sgygv DnhLcaL fclar CLAT_DROME : 590- 595: siysk Dh-LreL frcav CLAT_HUMAN : 621- 627: tgmai DnhLlaL relar CLAT_MOUSE : 513- 519: tgmai DnhLlaL relar CLAT_PIG : 513- 519: tgmai DnhLlgL relar CLAT_RAT : 512- 518: tgmai DnhLlaL relar CPT1_RAT : 654- 660: tgagi DrhLfcL yvvsk CPT2_HUMAN : 47- 52: tmhyq Ds-LprL pipkl CPT2_HUMAN : 553- 559: mgqgf DrhLfaL rhlaa CPT2_RAT : 47- 52: tmhyq Ds-LprL pipkl CPT2_RAT : 553- 559: mgqgf DrhLyaL rylat OCTC_RAT : 58- 63: tfqyq Ds-LppL pvpsl OCTC_RAT : 544- 550: hgkgf DrhLlgL lliak YEL4_YEAST : 33- 38: lpklc Dt-LqrL kesle YEL4_YEAST : 92- 98: yhdtr DcyLdeL hldin YEL4_YEAST : 330- 336: elhri DsaLfvL vldes R 18: 12.0102 17( 14) G-x(1,2)-G-x(2)-Y Occurences: 17(14) CACM_YEAST : 606- 611: pvtan Gf-GigY iirdh CACP_HUMAN : 314- 320: ivaed GscGlvY ehaaa CACP_HUMAN : 552- 557: pvvpd Gy-GvcY npmea CACP_YEAST : 615- 620: qvndn Gf-GlaY mlnne CLAT_CAEEL : 580- 585: avvrd Gy-GcpY niqpd CLAT_DROME : 386- 391: hemih Gg-GseY nsgnr CLAT_DROME : 410- 416: iictd GtwGlcY ehscs CLAT_DROME : 673- 678: pvtpr Gy-GcsY nphpe CLAT_HUMAN : 677- 682: pvvpn Gy-GacY npqpe CLAT_MOUSE : 569- 574: pvvpn Gy-GacY nphae CLAT_PIG : 569- 574: pvvpn Gy-GacY npqpe CLAT_RAT : 568- 573: pvvpn Gn-GacY npqpe CPT1_RAT : 719- 724: pvadd Gy-GvsY iivge CPT2_HUMAN : 609- 614: pvvsd Gf-GvgY avhdn CPT2_RAT : 609- 614: pvvpd Gf-GiaY avhdd OCTC_RAT : 473- 479: yyrlh GrpGccY etamt YEL4_YEAST : 695- 700: pavph Gf-GigY iikdd S 19: 12.0102 23( 14) L-x(3)-L-x(3,4)-L Occurences: 23(14) CACM_YEAST : 12- 20: lpipp LqdtLnry-L arvet CACP_HUMAN : 22- 30: lpvpp LqqsLdhy-L kalqp CACP_HUMAN : 582- 590: tnaar LahyLeka-L ldmra CACP_HUMAN : 582- 591: tnaar LahyLekalL dmral CACP_YEAST : 82- 90: lpvpe LkstLdky-L qtirp CACP_YEAST : 618- 627: dngfg LaymLnnewL hiniv CLAT_CAEEL : 28- 36: ppvps LeatLdry-L eyaav CLAT_CAEEL : 403- 412: evfde LaneLelevL ifnef CLAT_DROME : 43- 51: rvvsn LrgfLthr-L snitp CLAT_HUMAN : 139- 147: lpvpp LqqtLaty-L qcmrh CLAT_HUMAN : 175- 183: gapgg LgetLqqk-L lerqe CLAT_HUMAN : 175- 184: gapgg LgetLqqklL erqek CLAT_MOUSE : 31- 39: lpvpp LqqtLaty-L qcmqh CLAT_MOUSE : 67- 75: gapgg LgetLqek-L lerqe CLAT_MOUSE : 67- 76: gapgg LgetLqeklL erqek CLAT_PIG : 31- 39: lpvpp LqqtLaty-L rcmqh CLAT_PIG : 67- 75: gapgg LgetLqqk-L lerqe CLAT_PIG : 67- 76: gapgg LgetLqqklL erqeq CLAT_RAT : 30- 38: lpvpp LqqtLaty-L qcmqh CLAT_RAT : 66- 74: gapgg LgetLqek-L lerqe CLAT_RAT : 66- 75: gapgg LgetLqeklL erqek CPT1_RAT : 213- 221: dfavn LgpkLqwy-L klksw CPT2_HUMAN : 415- 423: vtvqk LnfeLtda-L ktgit CPT2_RAT : 415- 423: asvet LsfnLsga-L kagit OCTC_RAT : 68- 76: lpvps LeesLkky-L esvkp OCTC_RAT : 169- 178: rgsil LwhnLnywqL lrrek OCTC_RAT : 462- 471: dtfiq LalqLayyrL hgrpg YEL4_YEAST : 721- 729: rqgdr LmfmLswv-L geirs T 20: 12.0102 21( 14) Q-L-x(3,4)-A Occurences: 21(14) CACM_YEAST : 524- 529: datki QLlhd-A ctahs CACP_HUMAN : 114- 119: vdlqg QLrfa-A klieg CACP_YEAST : 490- 496: kylkr QLptyeA astrk CLAT_CAEEL : 70- 75: tplqe QLlei-A ekspn CLAT_CAEEL : 434- 440: pdgfi QLimqlA hykth CLAT_DROME : 465- 471: whvgp QLqlrfA qasks CLAT_DROME : 467- 473: vgpql QLrfaqA sksvd CLAT_HUMAN : 231- 236: pgtdd QLrfa-A slisg CLAT_MOUSE : 123- 128: qdtnd QLrfa-A slisg CLAT_MOUSE : 490- 495: asekl QLlqr-A iqaqt CLAT_PIG : 123- 128: qdtnd QLrfa-A nlisg CLAT_RAT : 122- 127: qdtnd QLrfa-A clisg CLAT_RAT : 489- 494: asekl QLlqt-A mqahk CPT1_RAT : 571- 577: pdafi QLalqlA hykdm CPT2_HUMAN : 468- 474: pdava QLafqmA flrqy CPT2_HUMAN : 541- 546: skyhg QLtke-A amgqg CPT2_HUMAN : 541- 547: skyhg QLtkeaA mgqgf CPT2_RAT : 460- 465: flkkk QLspd-A vaqla CPT2_RAT : 468- 474: pdava QLafqmA flrqy CPT2_RAT : 541- 546: skyhg QLtke-A amgqg CPT2_RAT : 541- 547: skyhg QLtkeaA mgqgf OCTC_RAT : 461- 467: pdtfi QLalqlA yyrlh YEL4_YEAST : 404- 409: wydkl QLvvt-A dakat Number of patterns evaluated by Pratt:13525 Total running time: 26 seconds