------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file ACTIN_DEPOLYMERIZING PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ACTIN_DEPOLYMERIZING.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACTP_ACACA 137 ADF1_CAEEL 165 ADF2_CAEEL 152 ADF_BRANA 126 ADF_LILLO 139 ADF_MAIZE 139 CADF_DROME 148 COF1_MOUSE 166 COF1_XENLA 168 COF2_MOUSE 166 COF2_XENLA 168 COFI_CHICK 166 COFI_HUMAN 166 COFI_PIG 166 COFI_RAT 166 COFI_YEAST 143 DEST_CHICK 165 DEST_HUMAN 165 Pratt run started at Thu Feb 6 18:29:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 29( 18) K-x(2,4)-Y-x(3)-K-x(0,1)-D 2: 12.5102 18( 18) M-x-Y-x-S 3: 12.5102 18( 18) C-x-Y-x(3)-D 4: 12.0102 22( 18) Y-x(3)-K-x(0,1)-D 5: 11.5102 19( 18) M-x(1,3)-Y-x-S 6: 11.5102 18( 18) R-x(1,3)-A-x(2)-D 7: 11.0102 23( 18) A-x(1,2)-D-x(1,3)-E 8: 11.0102 25( 18) K-x(2,4)-L-x(0,1)-G 9: 11.0102 40( 18) K-x(1,3)-K-x(2,3)-L 10: 11.0102 18( 18) K-x(2,3)-Y-x(3,5)-K 11: 11.0102 24( 18) F-x(4,5)-P-x(0,2)-D 12: 11.0102 22( 18) K-x(2,4)-F-x(4,5)-P 13: 11.0102 18( 18) Y-x(0,2)-A-x(1,2)-D 14: 11.0102 24( 18) A-x(0,1)-S-x(2,4)-A 15: 10.5102 32( 18) Y-x(0,2)-A-x(1,3)-D 16: 10.5102 25( 18) A-x(0,2)-V-x(1,3)-D 17: 10.5102 43( 18) K-x(1,3)-K-x(1,3)-L 18: 10.5102 22( 18) D-x(2,4)-K-x(1,3)-K 19: 8.3401 44( 18) G-x(2)-V 20: 8.3401 19( 18) G-x(5)-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 53.7565 22( 18) K-x(2,4)-F-x(4,5)-P-[DE]-x-[AS]-x(2)-[KR]-x-[KR]-M-[ILMV]-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] B 2: 29.9003 18( 18) M-[ILMV]-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] C 3: 26.5056 19( 18) M-x(1,3)-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] D 4: 19.6913 29( 18) K-x(2,4)-Y-x(3)-K-x(0,1)-D-x(2)-[DHKR]-x(2)-[FILV] E 5: 17.9195 18( 18) C-x-Y-[AG]-[AILV]-x-D F 6: 16.5213 18( 18) Y-x(3)-K-x(0,1)-D-x(2)-[DHKR]-x(2)-[FILV] G 7: 14.8293 18( 18) G-x(5)-Q-x-[NQT]-[ACDGTV]-x-[ADES] H 8: 14.2782 20( 18) A-x(1,2)-D-x(1,3)-E-x(3)-[DENQST]-x(3)-[ADEGNS] I 9: 13.4276 18( 18) R-x(1,3)-A-x(2)-D-x(4)-[ACDTV] J 10: 12.9434 23( 18) F-x(4,5)-P-x(0,2)-D-[CGNST] K 11: 12.4907 20( 18) G-x(2)-V-[ADENS]-x(2)-[ACSV] L 12: 11.0102 25( 18) K-x(2,4)-L-x(0,1)-G M 13: 11.0102 40( 18) K-x(1,3)-K-x(2,3)-L N 14: 11.0102 18( 18) K-x(2,3)-Y-x(3,5)-K O 15: 11.0102 18( 18) Y-x(0,2)-A-x(1,2)-D P 16: 11.0102 24( 18) A-x(0,1)-S-x(2,4)-A Q 17: 10.5102 32( 18) Y-x(0,2)-A-x(1,3)-D R 18: 10.5102 25( 18) A-x(0,2)-V-x(1,3)-D S 19: 10.5102 43( 18) K-x(1,3)-K-x(1,3)-L T 20: 10.5102 22( 18) D-x(2,4)-K-x(1,3)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 53.7565 22( 18) K-x(2,4)-F-x(4,5)-P-[DE]-x-[AS]-x(2)-[KR]-x-[KR]-M-[ILMV]-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] Occurences: 22(18) ACTP_ACACA : 78- 108: ggqrn Kit--Filwa-PDsApiKsKMMYTSTkdsIKkkL vgiqv ADF1_CAEEL : 103- 133: tskmd Kii--Flqic-PDgAsiKkKMVYASSaaaIKtsL gtgki ADF2_CAEEL : 91- 121: tstln Kvi--Fvqyc-PDnApvRrRMLYASSvraLKasL glesl ADF_BRANA : 69- 101: nencq KskifFiaws-PDsSrvRmKMVYASSkdrFKreL dgiqv ADF_BRANA : 69- 101: nencq Kski-FfiawsPDsSrvRmKMVYASSkdrFKreL dgiqv ADF_BRANA : 71- 101: ncqks Kif--Fiaws-PDsSrvRmKMVYASSkdrFKreL dgiqv ADF_LILLO : 82- 114: dencq KskifFisws-PDtSrvRsKMLYASTkdrFKreL dgiqv ADF_LILLO : 82- 114: dencq Kski-FfiswsPDtSrvRsKMLYASTkdrFKreL dgiqv ADF_LILLO : 84- 114: ncqks Kif--Fisws-PDtSrvRsKMLYASTkdrFKreL dgiqv ADF_MAIZE : 82- 114: iencq KskifFfsws-PDtArtRsKMLYASSkdrFRreL dgiqc ADF_MAIZE : 82- 114: iencq Kski-FffswsPDtArtRsKMLYASSkdrFRreL dgiqc ADF_MAIZE : 84- 114: ncqks Kif--Ffsws-PDtArtRsKMLYASSkdrFRreL dgiqc CADF_DROME : 85- 118: tsess KkqklFlmswcPDtAkvKkKMLYSSSfdaLKksL vgvqk CADF_DROME : 86- 118: sessk Kqkl-FlmswcPDtAkvKkKMLYSSSfdaLKksL vgvqk COF1_MOUSE : 96- 128: tkesk KedlvFifwa-PEnAplKsKMIYASSkdaIKkkL tgikh COF1_XENLA : 96- 128: tketk KedlvFvfwa-PEeAslKsKMIYASSkdaIKkrL pgikh COF2_MOUSE : 96- 128: tkesk KedlvFifwa-PEsAplKsKMIYASSkdaIKkkF tgikh COF2_XENLA : 96- 128: tketk KedlvFvfwa-PEeAslKsKMIYASSkdaIRkrF tgikh COFI_CHICK : 96- 128: tkesk KedlvFifwa-PEsAplKsKMIYASSkdaIKkkF tgikh COFI_HUMAN : 96- 128: tkesk KedlvFifwa-PEsAplKsKMIYASSkdaIKkkL tgikh COFI_PIG : 96- 128: tkesk KedlvFifwa-PEcAplKsKMIYASSkdaIKkkL tgikh COFI_RAT : 96- 128: tkesk KedlvFifwa-PEsAplKsKMIYASSkdaIKkkL tgikh COFI_YEAST : 82- 112: egkrs Kiv--Fftws-PDtApvRsKMVYASSkdaLRraL ngvst DEST_CHICK : 96- 128: tkesk KeelmFflwa-PEqAplKsKMIYASSkdaIKkkF qgikh DEST_HUMAN : 96- 128: tkesr KeelmFflwa-PElAplKsKMIYASSkdaIKkkF qgikh B 2: 29.9003 18( 18) M-[ILMV]-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] Occurences: 18(18) ACTP_ACACA : 95- 108: piksk MMYTSTkdsIKkkL vgiqv ADF1_CAEEL : 120- 133: sikkk MVYASSaaaIKtsL gtgki ADF2_CAEEL : 108- 121: pvrrr MLYASSvraLKasL glesl ADF_BRANA : 88- 101: rvrmk MVYASSkdrFKreL dgiqv ADF_LILLO : 101- 114: rvrsk MLYASTkdrFKreL dgiqv ADF_MAIZE : 101- 114: rtrsk MLYASSkdrFRreL dgiqc CADF_DROME : 105- 118: kvkkk MLYSSSfdaLKksL vgvqk COF1_MOUSE : 115- 128: plksk MIYASSkdaIKkkL tgikh COF1_XENLA : 115- 128: slksk MIYASSkdaIKkrL pgikh COF2_MOUSE : 115- 128: plksk MIYASSkdaIKkkF tgikh COF2_XENLA : 115- 128: slksk MIYASSkdaIRkrF tgikh COFI_CHICK : 115- 128: plksk MIYASSkdaIKkkF tgikh COFI_HUMAN : 115- 128: plksk MIYASSkdaIKkkL tgikh COFI_PIG : 115- 128: plksk MIYASSkdaIKkkL tgikh COFI_RAT : 115- 128: plksk MIYASSkdaIKkkL tgikh COFI_YEAST : 99- 112: pvrsk MVYASSkdaLRraL ngvst DEST_CHICK : 115- 128: plksk MIYASSkdaIKkkF qgikh DEST_HUMAN : 115- 128: plksk MIYASSkdaIKkkF qgikh C 3: 26.5056 19( 18) M-x(1,3)-Y-[AST]-S-[ST]-x(3)-[FIL]-[KR]-x(2)-[FL] Occurences: 19(18) ACTP_ACACA : 95- 108: piksk Mm--YTSTkdsIKkkL vgiqv ADF1_CAEEL : 120- 133: sikkk Mv--YASSaaaIKtsL gtgki ADF2_CAEEL : 108- 121: pvrrr Ml--YASSvraLKasL glesl ADF_BRANA : 86- 101: ssrvr MkmvYASSkdrFKreL dgiqv ADF_BRANA : 88- 101: rvrmk Mv--YASSkdrFKreL dgiqv ADF_LILLO : 101- 114: rvrsk Ml--YASTkdrFKreL dgiqv ADF_MAIZE : 101- 114: rtrsk Ml--YASSkdrFRreL dgiqc CADF_DROME : 105- 118: kvkkk Ml--YSSSfdaLKksL vgvqk COF1_MOUSE : 115- 128: plksk Mi--YASSkdaIKkkL tgikh COF1_XENLA : 115- 128: slksk Mi--YASSkdaIKkrL pgikh COF2_MOUSE : 115- 128: plksk Mi--YASSkdaIKkkF tgikh COF2_XENLA : 115- 128: slksk Mi--YASSkdaIRkrF tgikh COFI_CHICK : 115- 128: plksk Mi--YASSkdaIKkkF tgikh COFI_HUMAN : 115- 128: plksk Mi--YASSkdaIKkkL tgikh COFI_PIG : 115- 128: plksk Mi--YASSkdaIKkkL tgikh COFI_RAT : 115- 128: plksk Mi--YASSkdaIKkkL tgikh COFI_YEAST : 99- 112: pvrsk Mv--YASSkdaLRraL ngvst DEST_CHICK : 115- 128: plksk Mi--YASSkdaIKkkF qgikh DEST_HUMAN : 115- 128: plksk Mi--YASSkdaIKkkF qgikh D 4: 19.6913 29( 18) K-x(2,4)-Y-x(3)-K-x(0,1)-D-x(2)-[DHKR]-x(2)-[FILV] Occurences: 29(18) ACTP_ACACA : 92- 108: dsapi KskmmYtstK-DsiKkkL vgiqv ACTP_ACACA : 94- 108: apiks Kmm--YtstK-DsiKkkL vgiqv ADF1_CAEEL : 23- 39: lsegr Keyr-YiifKiDenKviV eaavt ADF2_CAEEL : 21- 38: dllhn KhqhsYiifKiDknDtaI vvekv ADF_BRANA : 87- 101: srvrm Kmv--YassK-DrfKreL dgiqv ADF_LILLO : 100- 114: srvrs Kml--YastK-DrfKreL dgiqv ADF_MAIZE : 100- 114: artrs Kml--YassK-DrfRreL dgiqc CADF_DROME : 12- 27: vsdvc Ktt--YeeiKkDkkHryV ifyir COF1_MOUSE : 112- 128: enapl KskmiYassK-DaiKkkL tgikh COF1_MOUSE : 114- 128: aplks Kmi--YassK-DaiKkkL tgikh COF1_XENLA : 112- 128: eeasl KskmiYassK-DaiKkrL pgikh COF1_XENLA : 114- 128: aslks Kmi--YassK-DaiKkrL pgikh COF2_MOUSE : 112- 128: esapl KskmiYassK-DaiKkkF tgikh COF2_MOUSE : 114- 128: aplks Kmi--YassK-DaiKkkF tgikh COF2_XENLA : 112- 128: eeasl KskmiYassK-DaiRkrF tgikh COF2_XENLA : 114- 128: aslks Kmi--YassK-DaiRkrF tgikh COFI_CHICK : 112- 128: esapl KskmiYassK-DaiKkkF tgikh COFI_CHICK : 114- 128: aplks Kmi--YassK-DaiKkkF tgikh COFI_HUMAN : 112- 128: esapl KskmiYassK-DaiKkkL tgikh COFI_HUMAN : 114- 128: aplks Kmi--YassK-DaiKkkL tgikh COFI_PIG : 112- 128: ecapl KskmiYassK-DaiKkkL tgikh COFI_PIG : 114- 128: aplks Kmi--YassK-DaiKkkL tgikh COFI_RAT : 112- 128: esapl KskmiYassK-DaiKkkL tgikh COFI_RAT : 114- 128: aplks Kmi--YassK-DaiKkkL tgikh COFI_YEAST : 98- 112: apvrs Kmv--YassK-DalRraL ngvst DEST_CHICK : 112- 128: eqapl KskmiYassK-DaiKkkF qgikh DEST_CHICK : 114- 128: aplks Kmi--YassK-DaiKkkF qgikh DEST_HUMAN : 112- 128: elapl KskmiYassK-DaiKkkF qgikh DEST_HUMAN : 114- 128: aplks Kmi--YassK-DaiKkkF qgikh E 5: 17.9195 18( 18) C-x-Y-[AG]-[AILV]-x-D Occurences: 18(18) ACTP_ACACA : 60- 66: lperd CrYAIfD yefqv ADF1_CAEEL : 80- 86: dnltd CrYAVfD fkftc ADF2_CAEEL : 67- 73: edgke CrYAAvD vevtv ADF_BRANA : 52- 58: lpade CrYAVfD fdftt ADF_LILLO : 65- 71: lppne CrYAVfD fdfvt ADF_MAIZE : 65- 71: lpane CrYAIyD ldftt CADF_DROME : 64- 70: cgpge CrYGLfD feymh COF1_MOUSE : 80- 86: lpdkd CrYALyD atyet COF1_XENLA : 80- 86: lprnd CrYALyD alyet COF2_MOUSE : 80- 86: lplnd CrYALyD atyet COF2_XENLA : 80- 86: lprnd CrYALyD alyet COFI_CHICK : 80- 86: lplnd CrYALyD atyet COFI_HUMAN : 80- 86: lpdkd CrYALyD atyet COFI_PIG : 80- 86: lpdkd CrYALyD atyet COFI_RAT : 80- 86: lpdkd CrYALyD atyet COFI_YEAST : 62- 68: lpend ClYAIyD feyei DEST_CHICK : 80- 86: lpekd CrYALyD asfet DEST_HUMAN : 80- 86: lpekd CrYALyD asfet F 6: 16.5213 18( 18) Y-x(3)-K-x(0,1)-D-x(2)-[DHKR]-x(2)-[FILV] Occurences: 18(18) ACTP_ACACA : 97- 108: kskmm YtstK-DsiKkkL vgiqv ADF1_CAEEL : 27- 39: rkeyr YiifKiDenKviV eaavt ADF2_CAEEL : 26- 38: khqhs YiifKiDknDtaI vvekv ADF_BRANA : 90- 101: rmkmv YassK-DrfKreL dgiqv ADF_LILLO : 103- 114: rskml YastK-DrfKreL dgiqv ADF_MAIZE : 103- 114: rskml YassK-DrfRreL dgiqc CADF_DROME : 15- 27: vcktt YeeiKkDkkHryV ifyir COF1_MOUSE : 117- 128: kskmi YassK-DaiKkkL tgikh COF1_XENLA : 117- 128: kskmi YassK-DaiKkrL pgikh COF2_MOUSE : 117- 128: kskmi YassK-DaiKkkF tgikh COF2_XENLA : 117- 128: kskmi YassK-DaiRkrF tgikh COFI_CHICK : 117- 128: kskmi YassK-DaiKkkF tgikh COFI_HUMAN : 117- 128: kskmi YassK-DaiKkkL tgikh COFI_PIG : 117- 128: kskmi YassK-DaiKkkL tgikh COFI_RAT : 117- 128: kskmi YassK-DaiKkkL tgikh COFI_YEAST : 101- 112: rskmv YassK-DalRraL ngvst DEST_CHICK : 117- 128: kskmi YassK-DaiKkkF qgikh DEST_HUMAN : 117- 128: kskmi YassK-DaiKkkF qgikh G 7: 14.8293 18( 18) G-x(5)-Q-x-[NQT]-[ACDGTV]-x-[ADES] Occurences: 18(18) ACTP_ACACA : 110- 121: kkklv GiqvevQaTDaA eised ADF1_CAEEL : 134- 145: iktsl GtgkilQfQVsD esems ADF2_CAEEL : 122- 133: lkasl GleslfQvQAsE msdld ADF_BRANA : 103- 114: kreld GiqvelQaTDpS emsfd ADF_LILLO : 116- 127: kreld GiqvelQaTDpS emsmd ADF_MAIZE : 116- 127: rreld GiqceiQaTDpS emsld CADF_DROME : 120- 131: kkslv GvqkyiQaTDlS easre COF1_MOUSE : 130- 141: kkklt GikhelQaNCyE evkdr COF1_XENLA : 130- 141: kkrlp GikhewQiNTyE dvndp COF2_MOUSE : 130- 141: kkkft GikhewQvNGlD dikdr COF2_XENLA : 130- 141: rkrft GikhewQtNTyD dindp COFI_CHICK : 130- 141: kkkft GikhewQvNGlD dikdr COFI_HUMAN : 130- 141: kkklt GikhelQaNCyE evkdr COFI_PIG : 130- 141: kkklt GikhelQaNCyE evkdr COFI_RAT : 130- 141: kkklt GikhelQaNCyE evkdr COFI_YEAST : 114- 125: rraln GvstdvQgTDfS evsyd DEST_CHICK : 130- 141: kkkfq GikhecQaNGpE dlnra DEST_HUMAN : 130- 141: kkkfq GikhecQaNGpE dlnra H 8: 14.2782 20( 18) A-x(1,2)-D-x(1,3)-E-x(3)-[DENQST]-x(3)-[ADEGNS] Occurences: 20(18) ACTP_ACACA : 117- 130: qvevq At-Daa-EiseDavsE rakkd ADF1_CAEEL : 61- 76: ddssk AafDkfvEdvkSrtdN ltdcr ADF1_CAEEL : 62- 76: dsska Af-DkfvEdvkSrtdN ltdcr ADF2_CAEEL : 70- 83: kecry AavDv--EvtvQrqgA egtst ADF2_CAEEL : 71- 83: ecrya Av-Dv--EvtvQrqgA egtst ADF_BRANA : 110- 123: qvelq At-Dps-EmsfDiikS ral ADF_LILLO : 123- 136: qvelq At-Dps-EmsmDiikA raf ADF_MAIZE : 123- 136: qceiq At-Dps-EmslDivrS rtn CADF_DROME : 127- 140: qkyiq At-Dls-EasrEaveE klrat COF1_MOUSE : 83- 98: kdcry AlyDatyEtkeSkkeD lvfif COF1_XENLA : 83- 98: ndcry AlyDalyEtkeTkkeD lvfvf COF2_MOUSE : 83- 98: ndcry AlyDatyEtkeSkkeD lvfif COF2_XENLA : 83- 98: ndcry AlyDalyEtkeTkkeD lvfvf COFI_CHICK : 83- 98: ndcry AlyDatyEtkeSkkeD lvfif COFI_HUMAN : 83- 98: kdcry AlyDatyEtkeSkkeD lvfif COFI_PIG : 83- 98: kdcry AlyDatyEtkeSkkeD lvfif COFI_RAT : 83- 98: kdcry AlyDatyEtkeSkkeD lvfif COFI_YEAST : 65- 78: ndcly AiyDf--EyeiNgneG krski DEST_CHICK : 83- 98: kdcry AlyDasfEtkeSkkeE lmffl DEST_HUMAN : 83- 98: kdcry AlyDasfEtkeSrkeE lmffl I 9: 13.4276 18( 18) R-x(1,3)-A-x(2)-D-x(4)-[ACDTV] Occurences: 18(18) ACTP_ACACA : 61- 71: perdc Ry--AifDyefqV dggqr ADF1_CAEEL : 81- 91: nltdc Ry--AvfDfkftC srvga ADF2_CAEEL : 68- 78: dgkec Ry--AavDvevtV qrqga ADF_BRANA : 53- 63: padec Ry--AvfDfdftT nencq ADF_LILLO : 66- 76: ppnec Ry--AvfDfdfvT dencq ADF_MAIZE : 66- 76: panec Ry--AiyDldftT iencq CADF_DROME : 45- 55: etvad Rn--AeyDqfleD iqkcg COF1_MOUSE : 81- 91: pdkdc Ry--AlyDatyeT keskk COF1_XENLA : 81- 91: prndc Ry--AlyDalyeT ketkk COF2_MOUSE : 81- 91: plndc Ry--AlyDatyeT keskk COF2_XENLA : 81- 91: prndc Ry--AlyDalyeT ketkk COFI_CHICK : 81- 91: plndc Ry--AlyDatyeT keskk COFI_HUMAN : 81- 91: pdkdc Ry--AlyDatyeT keskk COFI_PIG : 81- 91: pdkdc Ry--AlyDatyeT keskk COFI_RAT : 81- 91: pdkdc Ry--AlyDatyeT keskk COFI_YEAST : 3- 15: ms RsgvAvaDesltA fndlk DEST_CHICK : 81- 91: pekdc Ry--AlyDasfeT keskk DEST_HUMAN : 81- 91: pekdc Ry--AlyDasfeT kesrk J 10: 12.9434 23( 18) F-x(4,5)-P-x(0,2)-D-[CGNST] Occurences: 23(18) ACTP_ACACA : 51- 60: atyed Fksql-PerDC ryaif ACTP_ACACA : 81- 88: rnkit Filwa-P--DS apiks ADF1_CAEEL : 106- 113: mdkii Flqic-P--DG asikk ADF2_CAEEL : 94- 101: lnkvi Fvqyc-P--DN apvrr ADF_BRANA : 73- 81: qkski FfiawsP--DS srvrm ADF_BRANA : 74- 81: kskif Fiaws-P--DS srvrm ADF_LILLO : 86- 94: qkski FfiswsP--DT srvrs ADF_LILLO : 87- 94: kskif Fisws-P--DT srvrs ADF_MAIZE : 86- 94: qkski FffswsP--DT artrs ADF_MAIZE : 87- 94: kskif Ffsws-P--DT artrs CADF_DROME : 90- 98: kkqkl FlmswcP--DT akvkk COF1_MOUSE : 71- 80: dpytt Fvkml-PdkDC ryaly COF1_XENLA : 71- 80: dpykt Fvkml-PrnDC ryaly COF2_MOUSE : 71- 80: dpyts Fvkll-PlnDC ryaly COF2_XENLA : 71- 80: dpykt Fvkml-PrnDC ryaly COFI_CHICK : 71- 80: dpyta Fvkll-PlnDC ryaly COFI_HUMAN : 71- 80: dpyat Fvkml-PdkDC ryaly COFI_PIG : 71- 80: dpyat Fvkml-PdkDC ryaly COFI_RAT : 71- 80: dpytt Fvkml-PdkDC ryaly COFI_YEAST : 53- 62: psyda Flekl-PenDC lyaiy COFI_YEAST : 85- 92: rskiv Fftws-P--DT apvrs DEST_CHICK : 71- 80: dpfkh Fveml-PekDC ryaly DEST_HUMAN : 71- 80: dpfkh Fvgml-PekDC ryaly K 11: 12.4907 20( 18) G-x(2)-V-[ADENS]-x(2)-[ACSV] Occurences: 20(18) ACTP_ACACA : 2- 9: s GiaVSddC vqkfn ACTP_ACACA : 110- 117: kkklv GiqVEvqA tdaae ADF1_CAEEL : 4- 11: mss GvmVDpdV qtsfq ADF2_CAEEL : 4- 11: mas GvkVDpsC knayd ADF_BRANA : 103- 110: kreld GiqVElqA tdpse ADF_LILLO : 7- 14: ansss GmaVDdeC klkfm ADF_LILLO : 116- 123: kreld GiqVElqA tdpse ADF_MAIZE : 7- 14: ansss GlaVNdeC kvkfr CADF_DROME : 4- 11: mas GvtVSdvC kttye COF1_MOUSE : 4- 11: mas GvaVSdgV ikvfn COF1_XENLA : 4- 11: mas GvmVSddV ikvfn COF2_MOUSE : 4- 11: mas GvtVNdeV ikvfn COF2_XENLA : 4- 11: mas GvmVSddV vkvfn COFI_CHICK : 4- 11: mas GvtVNdeV ikvfn COFI_HUMAN : 4- 11: mas GvaVSdgV ikvfn COFI_PIG : 4- 11: mas GvaVSdgV ikvfn COFI_RAT : 4- 11: mas GvaVSdgV ikvfn COFI_YEAST : 5- 12: msrs GvaVAdeS ltafn DEST_CHICK : 4- 11: mas GvqVAdeV crify DEST_HUMAN : 4- 11: mas GvqVAdeV crify L 12: 11.0102 25( 18) K-x(2,4)-L-x(0,1)-G Occurences: 25(18) ACTP_ACACA : 105- 110: tkdsi Kkk--LvG iqvev ADF1_CAEEL : 130- 134: saaai Kts--L-G tgkil ADF2_CAEEL : 118- 122: svral Kas--L-G leslf ADF_BRANA : 98- 103: skdrf Kre--LdG iqvel ADF_LILLO : 111- 116: tkdrf Kre--LdG iqvel ADF_MAIZE : 42- 47: tdmei Kvdr-L-G epnqg CADF_DROME : 115- 120: sfdal Kks--LvG vqkyi COF1_MOUSE : 53- 58: ileeg Kei--LvG dvgqt COF1_MOUSE : 125- 130: skdai Kkk--LtG ikhel COF1_XENLA : 53- 58: ilepg Kei--LqG digcn COF1_XENLA : 125- 130: skdai Kkr--LpG ikhew COF2_MOUSE : 53- 58: iveea Kqi--LvG digdt COF2_MOUSE : 144- 150: glddi KdrstL-G eklgg COF2_XENLA : 53- 58: ilepg Kei--LqG dvgcn COFI_CHICK : 144- 150: glddi KdrstL-G eklgg COFI_HUMAN : 53- 58: ileeg Kei--LvG dvgqt COFI_HUMAN : 125- 130: skdai Kkk--LtG ikhel COFI_PIG : 53- 58: ileeg Kei--LvG dvgqt COFI_PIG : 125- 130: skdai Kkk--LtG ikhel COFI_RAT : 53- 58: ileeg Kei--LvG dvgqt COFI_RAT : 125- 130: skdai Kkk--LtG ikhel COFI_YEAST : 24- 31: lklgk KykfiLfG lndak COFI_YEAST : 26- 31: lgkky Kfi--LfG lndak DEST_CHICK : 53- 58: iveeg Kei--LvG dvgvt DEST_HUMAN : 53- 58: iveeg Kei--LvG dvgvt M 13: 11.0102 40( 18) K-x(1,3)-K-x(2,3)-L Occurences: 40(18) ACTP_ACACA : 101- 108: mytst KdsiKkk-L vgiqv ADF1_CAEEL : 100- 107: gagts Kmd-KiifL qicpd ADF2_CAEEL : 140- 146: sdlde Ksv-Ksd-L msnqr ADF_BRANA : 5- 11: ednc Kl--KfleL kkrif ADF_BRANA : 94- 101: vyass KdrfKre-L dgiqv ADF_LILLO : 15- 21: vddec Kl--KfmeL kakrn ADF_LILLO : 107- 114: lyast KdrfKre-L dgiqv ADF_MAIZE : 15- 21: vndec Kv--KfreL ksrrt CADF_DROME : 85- 91: tsess Kkq-Klf-L mswcp CADF_DROME : 86- 91: sessk Kq--Klf-L mswcp CADF_DROME : 100- 106: cpdta Kvk-Kkm-L ysssf CADF_DROME : 100- 106: cpdta Kv--KkkmL ysssf COF1_MOUSE : 30- 37: tpeev KkrkKav-L fclse COF1_MOUSE : 30- 37: tpeev Kkr-KkavL fclse COF1_MOUSE : 31- 37: peevk Krk-Kav-L fclse COF1_MOUSE : 31- 37: peevk Kr--KkavL fclse COF1_MOUSE : 92- 99: atyet KeskKed-L vfifw COF1_MOUSE : 92- 99: atyet Kes-KkedL vfifw COF1_MOUSE : 121- 128: iyass KdaiKkk-L tgikh COF1_XENLA : 92- 99: alyet KetkKed-L vfvfw COF1_XENLA : 92- 99: alyet Ket-KkedL vfvfw COF1_XENLA : 121- 128: iyass KdaiKkr-L pgikh COF2_MOUSE : 30- 37: tqeei KkrkKav-L fclsd COF2_MOUSE : 30- 37: tqeei Kkr-KkavL fclsd COF2_MOUSE : 31- 37: qeeik Krk-Kav-L fclsd COF2_MOUSE : 31- 37: qeeik Kr--KkavL fclsd COF2_MOUSE : 92- 99: atyet KeskKed-L vfifw COF2_MOUSE : 92- 99: atyet Kes-KkedL vfifw COF2_XENLA : 92- 99: alyet KetkKed-L vfvfw COF2_XENLA : 92- 99: alyet Ket-KkedL vfvfw COFI_CHICK : 30- 37: tpeei KkrkKav-L fclsd COFI_CHICK : 30- 37: tpeei Kkr-KkavL fclsd COFI_CHICK : 31- 37: peeik Krk-Kav-L fclsd COFI_CHICK : 31- 37: peeik Kr--KkavL fclsd COFI_CHICK : 92- 99: atyet KeskKed-L vfifw COFI_CHICK : 92- 99: atyet Kes-KkedL vfifw COFI_HUMAN : 30- 37: tpeev KkrkKav-L fclse COFI_HUMAN : 30- 37: tpeev Kkr-KkavL fclse COFI_HUMAN : 31- 37: peevk Krk-Kav-L fclse COFI_HUMAN : 31- 37: peevk Kr--KkavL fclse COFI_HUMAN : 92- 99: atyet KeskKed-L vfifw COFI_HUMAN : 92- 99: atyet Kes-KkedL vfifw COFI_HUMAN : 121- 128: iyass KdaiKkk-L tgikh COFI_PIG : 30- 37: tpeev KkrkKav-L fclse COFI_PIG : 30- 37: tpeev Kkr-KkavL fclse COFI_PIG : 31- 37: peevk Krk-Kav-L fclse COFI_PIG : 31- 37: peevk Kr--KkavL fclse COFI_PIG : 92- 99: atyet KeskKed-L vfifw COFI_PIG : 92- 99: atyet Kes-KkedL vfifw COFI_PIG : 121- 128: iyass KdaiKkk-L tgikh COFI_RAT : 30- 37: tpeev KkrkKav-L fclse COFI_RAT : 30- 37: tpeev Kkr-KkavL fclse COFI_RAT : 31- 37: peevk Krk-Kav-L fclse COFI_RAT : 31- 37: peevk Kr--KkavL fclse COFI_RAT : 92- 99: atyet KeskKed-L vfifw COFI_RAT : 92- 99: atyet Kes-KkedL vfifw COFI_RAT : 121- 128: iyass KdaiKkk-L tgikh COFI_YEAST : 23- 29: dlklg Kky-Kfi-L fglnd COFI_YEAST : 24- 29: lklgk Ky--Kfi-L fglnd DEST_CHICK : 92- 99: asfet KeskKee-L mfflw DEST_CHICK : 92- 99: asfet Kes-KkeeL mfflw DEST_HUMAN : 92- 99: asfet KesrKee-L mfflw N 14: 11.0102 18( 18) K-x(2,3)-Y-x(3,5)-K Occurences: 18(18) ACTP_ACACA : 94- 101: apiks Kmm-Ytst--K dsikk ADF1_CAEEL : 23- 31: lsegr KeyrYiif--K idenk ADF2_CAEEL : 12- 21: vdpsc Kna-YdllhnK hqhsy ADF_BRANA : 87- 94: srvrm Kmv-Yass--K drfkr ADF_LILLO : 100- 107: srvrs Kml-Yast--K drfkr ADF_MAIZE : 100- 107: artrs Kml-Yass--K drfrr CADF_DROME : 12- 19: vsdvc Ktt-Yeei--K kdkkh CADF_DROME : 12- 20: vsdvc Ktt-Yeeik-K dkkhr COF1_MOUSE : 114- 121: aplks Kmi-Yass--K daikk COF1_XENLA : 114- 121: aslks Kmi-Yass--K daikk COF2_MOUSE : 114- 121: aplks Kmi-Yass--K daikk COF2_XENLA : 114- 121: aslks Kmi-Yass--K dairk COFI_CHICK : 114- 121: aplks Kmi-Yass--K daikk COFI_HUMAN : 114- 121: aplks Kmi-Yass--K daikk COFI_PIG : 114- 121: aplks Kmi-Yass--K daikk COFI_RAT : 114- 121: aplks Kmi-Yass--K daikk COFI_YEAST : 98- 105: apvrs Kmv-Yass--K dalrr DEST_CHICK : 114- 121: aplks Kmi-Yass--K daikk DEST_HUMAN : 114- 121: aplks Kmi-Yass--K daikk O 15: 11.0102 18( 18) Y-x(0,2)-A-x(1,2)-D Occurences: 18(18) ACTP_ACACA : 62- 66: erdcr Y--AifD yefqv ADF1_CAEEL : 82- 86: ltdcr Y--AvfD fkftc ADF2_CAEEL : 69- 73: gkecr Ya-Av-D vevtv ADF2_CAEEL : 69- 73: gkecr Y--AavD vevtv ADF_BRANA : 54- 58: adecr Y--AvfD fdftt ADF_LILLO : 67- 71: pnecr Y--AvfD fdfvt ADF_MAIZE : 67- 71: anecr Y--AiyD ldftt CADF_DROME : 124- 129: vgvqk YiqAt-D lseas COF1_MOUSE : 82- 86: dkdcr Y--AlyD atyet COF1_XENLA : 82- 86: rndcr Y--AlyD alyet COF2_MOUSE : 82- 86: lndcr Y--AlyD atyet COF2_XENLA : 82- 86: rndcr Y--AlyD alyet COFI_CHICK : 82- 86: lndcr Y--AlyD atyet COFI_HUMAN : 82- 86: dkdcr Y--AlyD atyet COFI_PIG : 82- 86: dkdcr Y--AlyD atyet COFI_RAT : 82- 86: dkdcr Y--AlyD atyet COFI_YEAST : 64- 68: endcl Y--AiyD feyei DEST_CHICK : 82- 86: ekdcr Y--AlyD asfet DEST_HUMAN : 82- 86: ekdcr Y--AlyD asfet P 16: 11.0102 24( 18) A-x(0,1)-S-x(2,4)-A Occurences: 24(18) ACTP_ACACA : 127- 132: eised AvSer--A kkdvk ADF1_CAEEL : 123- 127: kkmvy A-Ssa--A aikts ADF1_CAEEL : 123- 128: kkmvy AsSaa--A iktsl ADF1_CAEEL : 123- 128: kkmvy A-Ssaa-A iktsl ADF2_CAEEL : 111- 116: rrmly AsSvr--A lkasl ADF2_CAEEL : 111- 116: rrmly A-Ssvr-A lkasl ADF_BRANA : 45- 49: yddft A-Slp--A decry ADF_LILLO : 2- 9: m AnSssgmA vddec ADF_MAIZE : 2- 9: m AnSssglA vndec CADF_DROME : 133- 137: tdlse A-Sre--A veekl COF1_MOUSE : 2- 6: m A-Sgv--A vsdgv COF1_MOUSE : 118- 123: skmiy AsSkd--A ikkkl COF1_MOUSE : 118- 123: skmiy A-Sskd-A ikkkl COF1_XENLA : 118- 123: skmiy AsSkd--A ikkrl COF1_XENLA : 118- 123: skmiy A-Sskd-A ikkrl COF2_MOUSE : 118- 123: skmiy AsSkd--A ikkkf COF2_MOUSE : 118- 123: skmiy A-Sskd-A ikkkf COF2_XENLA : 118- 123: skmiy AsSkd--A irkrf COF2_XENLA : 118- 123: skmiy A-Sskd-A irkrf COFI_CHICK : 118- 123: skmiy AsSkd--A ikkkf COFI_CHICK : 118- 123: skmiy A-Sskd-A ikkkf COFI_HUMAN : 2- 6: m A-Sgv--A vsdgv COFI_HUMAN : 118- 123: skmiy AsSkd--A ikkkl COFI_HUMAN : 118- 123: skmiy A-Sskd-A ikkkl COFI_PIG : 2- 6: m A-Sgv--A vsdgv COFI_PIG : 118- 123: skmiy AsSkd--A ikkkl COFI_PIG : 118- 123: skmiy A-Sskd-A ikkkl COFI_RAT : 2- 6: m A-Sgv--A vsdgv COFI_RAT : 118- 123: skmiy AsSkd--A ikkkl COFI_RAT : 118- 123: skmiy A-Sskd-A ikkkl COFI_YEAST : 102- 107: skmvy AsSkd--A lrral COFI_YEAST : 102- 107: skmvy A-Sskd-A lrral DEST_CHICK : 2- 8: m A-SgvqvA devcr DEST_CHICK : 118- 123: skmiy AsSkd--A ikkkf DEST_CHICK : 118- 123: skmiy A-Sskd-A ikkkf DEST_HUMAN : 2- 8: m A-SgvqvA devcr DEST_HUMAN : 118- 123: skmiy AsSkd--A ikkkf DEST_HUMAN : 118- 123: skmiy A-Sskd-A ikkkf Q 17: 10.5102 32( 18) Y-x(0,2)-A-x(1,3)-D Occurences: 32(18) ACTP_ACACA : 62- 66: erdcr Y--Aif-D yefqv ADF1_CAEEL : 82- 86: ltdcr Y--Avf-D fkftc ADF2_CAEEL : 69- 73: gkecr Ya-Av--D vevtv ADF2_CAEEL : 69- 73: gkecr Y--Aav-D vevtv ADF_BRANA : 54- 58: adecr Y--Avf-D fdftt ADF_BRANA : 90- 95: rmkmv Y--AsskD rfkre ADF_LILLO : 67- 71: pnecr Y--Avf-D fdfvt ADF_LILLO : 103- 108: rskml Y--AstkD rfkre ADF_MAIZE : 67- 71: anecr Y--Aiy-D ldftt ADF_MAIZE : 103- 108: rskml Y--AsskD rfrre CADF_DROME : 124- 129: vgvqk YiqAt--D lseas COF1_MOUSE : 82- 86: dkdcr Y--Aly-D atyet COF1_MOUSE : 117- 122: kskmi Y--AsskD aikkk COF1_XENLA : 82- 86: rndcr Y--Aly-D alyet COF1_XENLA : 117- 122: kskmi Y--AsskD aikkr COF2_MOUSE : 82- 86: lndcr Y--Aly-D atyet COF2_MOUSE : 117- 122: kskmi Y--AsskD aikkk COF2_XENLA : 82- 86: rndcr Y--Aly-D alyet COF2_XENLA : 117- 122: kskmi Y--AsskD airkr COFI_CHICK : 82- 86: lndcr Y--Aly-D atyet COFI_CHICK : 117- 122: kskmi Y--AsskD aikkk COFI_HUMAN : 82- 86: dkdcr Y--Aly-D atyet COFI_HUMAN : 117- 122: kskmi Y--AsskD aikkk COFI_PIG : 82- 86: dkdcr Y--Aly-D atyet COFI_PIG : 117- 122: kskmi Y--AsskD aikkk COFI_RAT : 82- 86: dkdcr Y--Aly-D atyet COFI_RAT : 117- 122: kskmi Y--AsskD aikkk COFI_YEAST : 64- 68: endcl Y--Aiy-D feyei COFI_YEAST : 101- 106: rskmv Y--AsskD alrra DEST_CHICK : 82- 86: ekdcr Y--Aly-D asfet DEST_CHICK : 117- 122: kskmi Y--AsskD aikkk DEST_HUMAN : 82- 86: ekdcr Y--Aly-D asfet DEST_HUMAN : 117- 122: kskmi Y--AsskD aikkk R 18: 10.5102 25( 18) A-x(0,2)-V-x(1,3)-D Occurences: 25(18) ACTP_ACACA : 4- 7: sgi A--Vs--D dcvqk ACTP_ACACA : 4- 8: sgi A--Vsd-D cvqkf ADF1_CAEEL : 41- 46: kvive Aa-Vtq-D qlgit ADF1_CAEEL : 42- 46: vivea A--Vtq-D qlgit ADF1_CAEEL : 83- 86: tdcry A--Vf--D fkftc ADF2_CAEEL : 2- 8: m AsgVkv-D psckn ADF_BRANA : 55- 58: decry A--Vf--D fdftt ADF_BRANA : 55- 60: decry A--VfdfD fttne ADF_LILLO : 9- 12: sssgm A--Vd--D ecklk ADF_LILLO : 68- 71: necry A--Vf--D fdfvt ADF_LILLO : 68- 73: necry A--VfdfD fvtde ADF_MAIZE : 9- 12: sssgl A--Vn--D eckvk CADF_DROME : 2- 9: m AsgVtvsD vcktt COF1_MOUSE : 2- 9: m AsgVavsD gvikv COF1_MOUSE : 6- 9: masgv A--Vs--D gvikv COF1_XENLA : 2- 9: m AsgVmvsD dvikv COF2_MOUSE : 2- 9: m AsgVtvnD evikv COF2_XENLA : 2- 9: m AsgVmvsD dvvkv COFI_CHICK : 2- 9: m AsgVtvnD evikv COFI_HUMAN : 2- 9: m AsgVavsD gvikv COFI_HUMAN : 6- 9: masgv A--Vs--D gvikv COFI_PIG : 2- 9: m AsgVavsD gvikv COFI_PIG : 6- 9: masgv A--Vs--D gvikv COFI_RAT : 2- 9: m AsgVavsD gvikv COFI_RAT : 6- 9: masgv A--Vs--D gvikv COFI_YEAST : 7- 10: srsgv A--Va--D eslta DEST_CHICK : 2- 9: m AsgVqvaD evcri DEST_HUMAN : 2- 9: m AsgVqvaD evcri S 19: 10.5102 43( 18) K-x(1,3)-K-x(1,3)-L Occurences: 43(18) ACTP_ACACA : 101- 108: mytst KdsiKkk-L vgiqv ADF1_CAEEL : 100- 107: gagts Kmd-KiifL qicpd ADF2_CAEEL : 140- 146: sdlde Ksv-Ksd-L msnqr ADF_BRANA : 5- 9: ednc Kl--Kf--L elkkr ADF_BRANA : 5- 11: ednc Kl--KfleL kkrif ADF_BRANA : 94- 101: vyass KdrfKre-L dgiqv ADF_LILLO : 15- 21: vddec Kl--KfmeL kakrn ADF_LILLO : 107- 114: lyast KdrfKre-L dgiqv ADF_MAIZE : 15- 21: vndec Kv--KfreL ksrrt CADF_DROME : 85- 91: tsess Kkq-Klf-L mswcp CADF_DROME : 86- 91: sessk Kq--Klf-L mswcp CADF_DROME : 100- 106: cpdta KvkkKm--L ysssf CADF_DROME : 100- 106: cpdta Kvk-Kkm-L ysssf CADF_DROME : 100- 106: cpdta Kv--KkkmL ysssf CADF_DROME : 102- 106: dtakv Kk--Km--L ysssf COF1_MOUSE : 30- 37: tpeev KkrkKav-L fclse COF1_MOUSE : 30- 37: tpeev Kkr-KkavL fclse COF1_MOUSE : 31- 37: peevk Krk-Kav-L fclse COF1_MOUSE : 31- 37: peevk Kr--KkavL fclse COF1_MOUSE : 92- 99: atyet KeskKed-L vfifw COF1_MOUSE : 92- 99: atyet Kes-KkedL vfifw COF1_MOUSE : 121- 128: iyass KdaiKkk-L tgikh COF1_XENLA : 69- 75: vedpy KtfvKm--L prndc COF1_XENLA : 92- 99: alyet KetkKed-L vfvfw COF1_XENLA : 92- 99: alyet Ket-KkedL vfvfw COF1_XENLA : 121- 128: iyass KdaiKkr-L pgikh COF2_MOUSE : 30- 37: tqeei KkrkKav-L fclsd COF2_MOUSE : 30- 37: tqeei Kkr-KkavL fclsd COF2_MOUSE : 31- 37: qeeik Krk-Kav-L fclsd COF2_MOUSE : 31- 37: qeeik Kr--KkavL fclsd COF2_MOUSE : 92- 99: atyet KeskKed-L vfifw COF2_MOUSE : 92- 99: atyet Kes-KkedL vfifw COF2_XENLA : 69- 75: vedpy KtfvKm--L prndc COF2_XENLA : 92- 99: alyet KetkKed-L vfvfw COF2_XENLA : 92- 99: alyet Ket-KkedL vfvfw COFI_CHICK : 30- 37: tpeei KkrkKav-L fclsd COFI_CHICK : 30- 37: tpeei Kkr-KkavL fclsd COFI_CHICK : 31- 37: peeik Krk-Kav-L fclsd COFI_CHICK : 31- 37: peeik Kr--KkavL fclsd COFI_CHICK : 92- 99: atyet KeskKed-L vfifw COFI_CHICK : 92- 99: atyet Kes-KkedL vfifw COFI_HUMAN : 30- 37: tpeev KkrkKav-L fclse COFI_HUMAN : 30- 37: tpeev Kkr-KkavL fclse COFI_HUMAN : 31- 37: peevk Krk-Kav-L fclse COFI_HUMAN : 31- 37: peevk Kr--KkavL fclse COFI_HUMAN : 92- 99: atyet KeskKed-L vfifw COFI_HUMAN : 92- 99: atyet Kes-KkedL vfifw COFI_HUMAN : 121- 128: iyass KdaiKkk-L tgikh COFI_PIG : 30- 37: tpeev KkrkKav-L fclse COFI_PIG : 30- 37: tpeev Kkr-KkavL fclse COFI_PIG : 31- 37: peevk Krk-Kav-L fclse COFI_PIG : 31- 37: peevk Kr--KkavL fclse COFI_PIG : 92- 99: atyet KeskKed-L vfifw COFI_PIG : 92- 99: atyet Kes-KkedL vfifw COFI_PIG : 121- 128: iyass KdaiKkk-L tgikh COFI_RAT : 30- 37: tpeev KkrkKav-L fclse COFI_RAT : 30- 37: tpeev Kkr-KkavL fclse COFI_RAT : 31- 37: peevk Krk-Kav-L fclse COFI_RAT : 31- 37: peevk Kr--KkavL fclse COFI_RAT : 92- 99: atyet KeskKed-L vfifw COFI_RAT : 92- 99: atyet Kes-KkedL vfifw COFI_RAT : 121- 128: iyass KdaiKkk-L tgikh COFI_YEAST : 23- 29: dlklg Kky-Kfi-L fglnd COFI_YEAST : 24- 29: lklgk Ky--Kfi-L fglnd DEST_CHICK : 92- 99: asfet KeskKee-L mfflw DEST_CHICK : 92- 99: asfet Kes-KkeeL mfflw DEST_HUMAN : 92- 99: asfet KesrKee-L mfflw T 20: 10.5102 22( 18) D-x(2,4)-K-x(1,3)-K Occurences: 22(18) ACTP_ACACA : 87- 94: ilwap DsapiKs--K mmyts ACTP_ACACA : 102- 107: ytstk Dsi--Kk--K lvgiq ADF1_CAEEL : 112- 119: lqicp DgasiKk--K mvyas ADF2_CAEEL : 136- 143: asems Dlde-Ksv-K sdlms ADF_BRANA : 2- 7: e Dnc--Kl--K flelk ADF_LILLO : 11- 17: sgmav Ddec-Kl--K fmelk ADF_LILLO : 12- 17: gmavd Dec--Kl--K fmelk ADF_LILLO : 77- 84: fdfvt DencqKs--K iffis ADF_MAIZE : 12- 17: glavn Dec--Kv--K frelk CADF_DROME : 97- 102: mswcp Dta--Kv--K kkmly CADF_DROME : 97- 104: mswcp DtakvKk--K mlyss CADF_DROME : 97- 103: mswcp Dta--Kvk-K kmlys CADF_DROME : 97- 104: mswcp Dta--KvkkK mlyss COF1_MOUSE : 122- 127: yassk Dai--Kk--K ltgik COF1_XENLA : 28- 33: qlspe Dak--Kr--K kavvf COF1_XENLA : 28- 34: qlspe Dak--Krk-K avvfc COF1_XENLA : 66- 73: gcnve Dpy--KtfvK mlprn COF2_MOUSE : 122- 127: yassk Dai--Kk--K ftgik COF2_XENLA : 66- 73: gcnve Dpy--KtfvK mlprn COFI_CHICK : 122- 127: yassk Dai--Kk--K ftgik COFI_HUMAN : 122- 127: yassk Dai--Kk--K ltgik COFI_PIG : 122- 127: yassk Dai--Kk--K ltgik COFI_RAT : 122- 127: yassk Dai--Kk--K ltgik COFI_YEAST : 18- 26: ltafn DlklgKky-K filfg DEST_CHICK : 122- 127: yassk Dai--Kk--K fqgik DEST_HUMAN : 122- 127: yassk Dai--Kk--K fqgik Number of patterns evaluated by Pratt:432 Total running time: 1 seconds