------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file ACETATE_KINASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ACETATE_KINASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACKA_BACSU 395 ACKA_ECOLI 400 ACKA_HAEIN 401 ACKA_METTE 408 BUK_CLOAB 355 YHAA_ECOLI 402 Pratt run started at Thu Feb 6 18:28:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.5203 6( 6) H-x(4)-G-G-x(4,5)-S-x(2,4)-D-E 2: 20.8503 6( 6) N-x-G-S-x-S-x-K 3: 19.8503 6( 6) T-x(2,3)-G-x(3)-L-x(5)-G-x(1,2)-R 4: 19.8503 6( 6) D-x(3)-F-T-x(0,1)-G-x(0,1)-G 5: 19.8503 6( 6) G-x(4)-G-x-H-x(1,3)-H-x(2)-V 6: 19.8503 6( 6) G-x(2,3)-L-x(5)-G-T-x(4,5)-D 7: 19.8503 6( 6) G-x(3,4)-L-x(5)-G-T-x(4,5)-D 8: 19.3503 7( 6) G-x(3,4)-G-x-H-x(1,3)-H-x(2)-V 9: 19.3503 6( 6) L-x(4)-M-G-x(1,3)-G-x(4,5)-A 10: 19.3503 6( 6) G-G-x(4,5)-S-x(2,4)-D-E 11: 19.3503 6( 6) L-x(5)-G-T-x(4,5)-D-x(0,2)-A 12: 19.3503 6( 6) S-x(1,3)-G-x(3,4)-L-x(5)-G-T 13: 18.8503 8( 6) V-x(1,3)-P-x(0,2)-T-x-E-x(4)-A 14: 18.8503 7( 6) I-x(0,2)-P-x(0,2)-T-x-E-x(4)-A 15: 16.6802 6( 6) F-T-x-G-I 16: 16.6802 6( 6) G-S-x-S-x-K 17: 16.1802 6( 6) G-x-G-x(0,1)-E-N 18: 16.1802 6( 6) K-x-S-G-x(1,2)-G 19: 16.1802 6( 6) V-x(1,2)-T-x-E-x(4)-A 20: 16.1802 6( 6) N-x(5)-L-x(3,4)-G-x(5)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 70.3935 6( 6) G-[GIV]-x(3)-G-x-H-x(1,3)-H-x(2)-V-[ASTV]-[DEQR]-x-[ANV]-x(4)-[GN]-x-[AGP]-x(2)-[DEQS]-x(3)-[AIV]-x-[ACS]-x-[LP]-[GI]-[GN]-[DG]-x-[SV]-x(2)-[ACV]-[FIV]-[ERS]-[GN] B 2: 67.2249 7( 6) G-x(3,4)-G-x-H-x(1,3)-H-x(2)-V-[ASTV]-[DEQR]-x-[ANV]-x(4)-[GN]-x-[AGP]-x(2)-[DEQS]-x(3)-[AIV]-x-[ACS]-x-[LP]-[GI]-[GN]-[DG]-x-[SV]-x(2)-[ACV]-[FIV]-[ERS]-[GN] C 3: 54.4796 6( 6) T-x(2,3)-G-x-[DT]-[EP]-L-x-[AG]-[LV]-x(2)-G-x(1,2)-R-[CSV]-[GL]-[DNS]-[GIV]-[DE]-x-[AGQ]-[AIL]-x(2)-[FHWY] D 4: 50.2631 6( 6) S-x(1,3)-G-x(3,4)-L-x-[GP]-[LV]-x(2)-G-T-x-[ACS]-[GV]-[DNS]-x-[AD]-x-[AGV]-x(4)-[ILV]-x(4)-[GNP]-x-[AST]-x(3)-[GILV] E 5: 36.4952 6( 6) F-T-[AG]-G-I-[AG]-x-[NS]-[APS]-[ASTV]-x-[IV]-x-[DEKR] F 6: 34.7873 6( 6) N-[ACP]-G-S-[ST]-S-x-K-x-[AGQS]-[ILV]-x-[DE] G 7: 34.6086 6( 6) L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(0,2)-A-[ILM]-x(3)-[AIL]-x(4)-[GQ] H 8: 33.2932 6( 6) D-[AGQ]-[IV]-[AIV]-F-T-x(0,1)-G-x(0,1)-G-x-[AGN]-x-[ANSV] I 9: 33.1181 6( 6) K-[EK]-S-G-x(1,2)-G-x-[EST]-[EGN]-[FLV]-[NST]-x-[DV] J 10: 30.1082 8( 6) V-x(1,3)-P-x(0,2)-T-[DN]-E-x(3)-[IV]-A-x(2)-[ASTV]-x(2)-[ILP] K 11: 30.1082 7( 6) I-x(0,2)-P-x(0,2)-T-[DN]-E-x(3)-[IV]-A-x(2)-[ASTV]-x(2)-[ILP] L 12: 28.4974 6( 6) G-x(2,3)-L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(2)-[AILV] M 13: 28.4974 6( 6) G-x(3,4)-L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(2)-[AILV] N 14: 28.1714 6( 6) N-x(5)-L-x(3,4)-G-x-[GSV]-[GNS]-x-[FILV]-R-x-[GILV]-x(2)-[AGIV] O 15: 27.9234 6( 6) G-S-[ST]-S-x-K-x-[AGQS]-[ILV]-x-[DE] P 16: 26.1711 6( 6) H-x(2)-[ANV]-x-G-G-x(4,5)-S-x(2,4)-D-E Q 17: 25.7216 6( 6) L-x-[GV]-[LV]-x-M-G-x(1,3)-G-x(4,5)-A R 18: 21.6243 6( 6) G-x-G-x(0,1)-E-N-x-[ANSV]-x-[IV] S 19: 21.0204 6( 6) V-x(1,2)-T-x-E-x(4)-A-x(2)-[AST]-x(2)-[ILPV] T 20: 19.3503 6( 6) G-G-x(4,5)-S-x(2,4)-D-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 70.3935 6( 6) G-[GIV]-x(3)-G-x-H-x(1,3)-H-x(2)-V-[ASTV]-[DEQR]-x-[ANV]-x(4)-[GN]-x-[AGP]-x(2)-[DEQS]-x(3)-[AIV]-x-[ACS]-x-[LP]-[GI]-[GN]-[DG]-x-[SV]-x(2)-[ACV]-[FIV]-[ERS]-[GN] Occurences: 6(6) ACKA_BACSU : 171- 218: yyekf GIrkyGfHgtsHkyVTErAaellGrPlkDlrlIsChLGNGaSiaAVEG gksid ACKA_ECOLI : 175- 222: lykeh GIrryGaHgtsHfyVTQeAakmlNkPveElniItChLGNGgSvsAIRN gkcvd ACKA_HAEIN : 172- 219: lykeh GVrryGaHgtsHyfVSReVakyvGkPadQvnaIiChLGNGgSvsVVRN gqcid ACKA_METTE : 173- 220: lyekh GVrkyGfHgtsHkyVAErAalmlGkPaeEtkiItChLGNGsSitAVEG gksve BUK_CLOAB : 186- 231: vvhmg GGvsvGaHn--HgkVVDvNnaldGdGpfSperAgSvPIGDlVkmCFSG kysea YHAA_ECOLI : 168- 215: yyeel GVrryGfHgtsHryVSQrAhsllNlAedDsglVvAhLGNGaSicAVRN gqsvd B 2: 67.2249 7( 6) G-x(3,4)-G-x-H-x(1,3)-H-x(2)-V-[ASTV]-[DEQR]-x-[ANV]-x(4)-[GN]-x-[AGP]-x(2)-[DEQS]-x(3)-[AIV]-x-[ACS]-x-[LP]-[GI]-[GN]-[DG]-x-[SV]-x(2)-[ACV]-[FIV]-[ERS]-[GN] Occurences: 7(6) ACKA_BACSU : 171- 218: yyekf GirkyGfHgtsHkyVTErAaellGrPlkDlrlIsChLGNGaSiaAVEG gksid ACKA_ECOLI : 175- 222: lykeh GirryGaHgtsHfyVTQeAakmlNkPveElniItChLGNGgSvsAIRN gkcvd ACKA_HAEIN : 172- 219: lykeh GvrryGaHgtsHyfVSReVakyvGkPadQvnaIiChLGNGgSvsVVRN gqcid ACKA_METTE : 173- 220: lyekh GvrkyGfHgtsHkyVAErAalmlGkPaeEtkiItChLGNGsSitAVEG gksve BUK_CLOAB : 186- 231: vvhmg GgvsvGaHn--HgkVVDvNnaldGdGpfSperAgSvPIGDlVkmCFSG kysea BUK_CLOAB : 187- 231: vhmgg Gvsv-GaHn--HgkVVDvNnaldGdGpfSperAgSvPIGDlVkmCFSG kysea YHAA_ECOLI : 168- 215: yyeel GvrryGfHgtsHryVSQrAhsllNlAedDsglVvAhLGNGaSicAVRN gqsvd C 3: 54.4796 6( 6) T-x(2,3)-G-x-[DT]-[EP]-L-x-[AG]-[LV]-x(2)-G-x(1,2)-R-[CSV]-[GL]-[DNS]-[GIV]-[DE]-x-[AGQ]-[AIL]-x(2)-[FHWY] Occurences: 6(6) ACKA_BACSU : 224- 250: gksid Tsm-GfTPLaGVamGt-RSGNIDpALipY imekt ACKA_ECOLI : 228- 254: gkcvd Tsm-GlTPLeGLvmGt-RSGDIDpAIifH lhdtl ACKA_HAEIN : 225- 251: gqcid Tsm-GlTPLeGLvmGt-RCGDIDpAIvfY lyktl ACKA_METTE : 226- 252: gksve Tsm-GfTPLeGLamGt-RCGSIDpAIvpF lmeke BUK_CLOAB : 327- 355: wiapv TvypGeDELlALaqGaiRVLDGEeQAkvY YHAA_ECOLI : 221- 247: gqsvd Tsm-GmTPLeGLmmGt-RSGDVDfGAmsW vasqt D 4: 50.2631 6( 6) S-x(1,3)-G-x(3,4)-L-x-[GP]-[LV]-x(2)-G-T-x-[ACS]-[GV]-[DNS]-x-[AD]-x-[AGV]-x(4)-[ILV]-x(4)-[GNP]-x-[AST]-x(3)-[GILV] Occurences: 6(6) ACKA_BACSU : 225- 262: ksidt Sm--Gftp-LaGVamGTrSGNiDpAlipyImektGqTadeV lntln ACKA_ECOLI : 229- 266: kcvdt Sm--Gltp-LeGLvmGTrSGDiDpAiifhLhdtlGmSvdaI nkllt ACKA_HAEIN : 226- 263: qcidt Sm--Gltp-LeGLvmGTrCGDiDpAivfyLyktlGmSmdqI eetlv ACKA_METTE : 227- 264: ksvet Sm--Gftp-LeGLamGTrCGSiDpAivpfLmekeGlTtreI dtlmn BUK_CLOAB : 70- 110: diktl SaivGrggmLrPVegGTyAVNdAmVedlkVgvqgPhAsnlG giiak YHAA_ECOLI : 222- 259: qsvdt Sm--Gmtp-LeGLmmGTrSGDvDfGamswVasqtNqSlgdL ervvn E 5: 36.4952 6( 6) F-T-[AG]-G-I-[AG]-x-[NS]-[APS]-[ASTV]-x-[IV]-x-[DEKR] Occurences: 6(6) ACKA_BACSU : 326- 339: vdaii FTAGIGeNSVeVrE rvlrg ACKA_ECOLI : 330- 343: ldavv FTGGIGeNAAmVrE lslgk ACKA_HAEIN : 330- 343: ldaia FTGGIGeNSAhVrE lalnh ACKA_METTE : 328- 341: adavv FTAGIGeNSAsIrK riltg BUK_CLOAB : 302- 315: vdqii FTGGIAySPTlVpD lkakv YHAA_ECOLI : 323- 336: ldgii FTGGIGeNSSlIrR lvmeh F 6: 34.7873 6( 6) N-[ACP]-G-S-[ST]-S-x-K-x-[AGQS]-[ILV]-x-[DE] Occurences: 6(6) ACKA_BACSU : 8- 20: kiiai NAGSSSlKfQLfE mpset ACKA_ECOLI : 10- 22: lvlvl NCGSSSlKfAIiD avnge ACKA_HAEIN : 9- 21: lvlil NCGSSSlKfAIlD patge ACKA_METTE : 7- 19: kvlvi NAGSSSlKyQLiD mtnes BUK_CLOAB : 9- 21: kllii NPGSTStKiGVyE gekel YHAA_ECOLI : 11- 23: vvlvi NCGSSSiKfSVlD asdce G 7: 34.6086 6( 6) L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(0,2)-A-[ILM]-x(3)-[AIL]-x(4)-[GQ] Occurences: 6(6) ACKA_BACSU : 231- 256: mgftp LaGVamGTrsgniDp-ALipyImektG qtade ACKA_ECOLI : 235- 260: mgltp LeGLvmGTrsgdiDp-AIifhLhdtlG msvda ACKA_HAEIN : 232- 257: mgltp LeGLvmGTrcgdiDp-AIvfyLyktlG msmdq ACKA_METTE : 233- 258: mgftp LeGLamGTrcgsiDp-AIvpfLmekeG lttre BUK_CLOAB : 79- 102: grggm LrPVegGTyavn-D--AMvedLkvgvQ gphas YHAA_ECOLI : 228- 254: mgmtp LeGLmmGTrsgdvDfgAMswvAsqtnQ slgdl H 8: 33.2932 6( 6) D-[AGQ]-[IV]-[AIV]-F-T-x(0,1)-G-x(0,1)-G-x-[AGN]-x-[ANSV] Occurences: 6(6) ACKA_BACSU : 322- 335: rmsgv DAIIFTaGiGeNsV evrer ACKA_ECOLI : 326- 337: mdgrl DAVVFT-G-GiGeN aamvr ACKA_ECOLI : 326- 339: mdgrl DAVVFTgGiGeNaA mvrel ACKA_HAEIN : 326- 337: gddhl DAIAFT-G-GiGeN sahvr ACKA_HAEIN : 326- 339: gddhl DAIAFTgGiGeNsA hvrel ACKA_METTE : 324- 337: vlnga DAVVFTaGiGeNsA sirkr BUK_CLOAB : 298- 309: legkv DQIIFT-G-GiAyS ptlvp YHAA_ECOLI : 319- 330: slrrl DGIIFT-G-GiGeN sslir YHAA_ECOLI : 319- 332: slrrl DGIIFTgGiGeNsS lirrl I 9: 33.1181 6( 6) K-[EK]-S-G-x(1,2)-G-x-[EST]-[EGN]-[FLV]-[NST]-x-[DV] Occurences: 6(6) ACKA_BACSU : 268- 281: lntln KKSGllGiSGFSsD lrdiv ACKA_ECOLI : 272- 285: nkllt KESGllGlTEVTsD cryve ACKA_HAEIN : 269- 282: eetlv KKSGllGlTEVTsD cryae ACKA_METTE : 270- 283: dtlmn KKSGvlGvSGLSnD frdld BUK_CLOAB : 168- 180: akryg KESGq-GyENLNlV vvhmg YHAA_ECOLI : 265- 278: ervvn KESGllGiSGLSsD lrvle J 10: 30.1082 8( 6) V-x(1,3)-P-x(0,2)-T-[DN]-E-x(3)-[IV]-A-x(2)-[ASTV]-x(2)-[ILP] Occurences: 8(6) ACKA_BACSU : 375- 393: hspvk VmiiP--TDEevmIArdVvrL ak ACKA_ECOLI : 381- 398: gtrpa Vvi-P--TNEelvIAqdAsrL ta ACKA_ECOLI : 382- 398: trpav Vi--P--TNEelvIAqdAsrL ta ACKA_HAEIN : 383- 399: afkai Vl--P--TNEelvIAqdTakL cf ACKA_METTE : 377- 395: dakvr VfviP--TNEelaIAreTkeI vetev ACKA_METTE : 379- 395: kvrvf Vi--P--TNEelaIAreTkeI vetev BUK_CLOAB : 128- 146: ipsfi Vd--PvvTDEladVArlSgvP elprk YHAA_ECOLI : 376- 392: rvica Vi--P--TNEekmIAldAihL gkvna K 11: 30.1082 7( 6) I-x(0,2)-P-x(0,2)-T-[DN]-E-x(3)-[IV]-A-x(2)-[ASTV]-x(2)-[ILP] Occurences: 7(6) ACKA_BACSU : 377- 393: pvkvm Ii-P--TDEevmIArdVvrL ak ACKA_BACSU : 378- 393: vkvmi I--P--TDEevmIArdVvrL ak ACKA_ECOLI : 383- 398: rpavv I--P--TNEelvIAqdAsrL ta ACKA_HAEIN : 382- 399: safka IvlP--TNEelvIAqdTakL cf ACKA_METTE : 380- 395: vrvfv I--P--TNEelaIAreTkeI vetev BUK_CLOAB : 127- 146: nipsf IvdPvvTDEladVArlSgvP elprk YHAA_ECOLI : 377- 392: vicav I--P--TNEekmIAldAihL gkvna L 12: 28.4974 6( 6) G-x(2,3)-L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(2)-[AILV] Occurences: 6(6) ACKA_BACSU : 227- 247: idtsm GftpLaGVamGTrsgniDpaL ipyim ACKA_ECOLI : 231- 251: vdtsm GltpLeGLvmGTrsgdiDpaI ifhlh ACKA_HAEIN : 228- 248: idtsm GltpLeGLvmGTrcgdiDpaI vfyly ACKA_METTE : 229- 249: vetsm GftpLeGLamGTrcgsiDpaI vpflm BUK_CLOAB : 76- 94: aivgr Ggm-LrPVegGTyavn-DamV edlkv YHAA_ECOLI : 224- 244: vdtsm GmtpLeGLmmGTrsgdvDfgA mswva M 13: 28.4974 6( 6) G-x(3,4)-L-x-[GP]-[LV]-x(2)-G-T-x(4,5)-D-x(2)-[AILV] Occurences: 6(6) ACKA_BACSU : 227- 247: idtsm Gftp-LaGVamGTrsgniDpaL ipyim ACKA_ECOLI : 231- 251: vdtsm Gltp-LeGLvmGTrsgdiDpaI ifhlh ACKA_HAEIN : 228- 248: idtsm Gltp-LeGLvmGTrcgdiDpaI vfyly ACKA_METTE : 229- 249: vetsm Gftp-LeGLamGTrcgsiDpaI vpflm BUK_CLOAB : 74- 94: lsaiv GrggmLrPVegGTyavn-DamV edlkv YHAA_ECOLI : 224- 244: vdtsm Gmtp-LeGLmmGTrsgdvDfgA mswva N 14: 28.1714 6( 6) N-x(5)-L-x(3,4)-G-x-[GSV]-[GNS]-x-[FILV]-R-x-[GILV]-x(2)-[AGIV] Occurences: 6(6) ACKA_BACSU : 267- 288: vlntl NkksglLgis-GfSSdLRdIveA tkegn ACKA_ECOLI : 205- 226: pveel NiitchLgng-GsVSaIRnGkcV dtsmg ACKA_HAEIN : 202- 223: padqv NaiichLgng-GsVSvVRnGqcI dtsmg ACKA_METTE : 269- 290: idtlm NkksgvLgvs-GlSNdFRdLdeA askgn BUK_CLOAB : 63- 85: vlkek NfdiktLsaivGrGGmLRpVegG tyavn YHAA_ECOLI : 264- 285: lervv NkesglLgis-GlSSdLRvLekA whegh O 15: 27.9234 6( 6) G-S-[ST]-S-x-K-x-[AGQS]-[ILV]-x-[DE] Occurences: 6(6) ACKA_BACSU : 10- 20: iaina GSSSlKfQLfE mpset ACKA_ECOLI : 12- 22: lvlnc GSSSlKfAIiD avnge ACKA_HAEIN : 11- 21: lilnc GSSSlKfAIlD patge ACKA_METTE : 9- 19: lvina GSSSlKyQLiD mtnes BUK_CLOAB : 11- 21: liinp GSTStKiGVyE gekel YHAA_ECOLI : 13- 23: lvinc GSSSiKfSVlD asdce P 16: 26.1711 6( 6) H-x(2)-[ANV]-x-G-G-x(4,5)-S-x(2,4)-D-E Occurences: 6(6) ACKA_BACSU : 88- 106: idgig HrvVhGGekfsdSvlltDE tikei ACKA_ECOLI : 90- 107: ltaig HriVhGGekytsSvvi-DE sviqg ACKA_ECOLI : 90- 107: ltaig HriVhGGekyt-SsvviDE sviqg ACKA_HAEIN : 87- 105: iaaig HriVhGGekytqSvivtDE vvkgi ACKA_METTE : 90- 107: inavg HrvVhGGekfttSaly-DE gveka BUK_CLOAB : 105- 120: gvqgp HasNlGGiiak-Sig--DE lnips YHAA_ECOLI : 85- 103: valig HriAhGGsifteSaiitDE vidni Q 17: 25.7216 6( 6) L-x-[GV]-[LV]-x-M-G-x(1,3)-G-x(4,5)-A Occurences: 6(6) ACKA_BACSU : 231- 246: mgftp LaGVaMGtrsGnidp-A lipyi ACKA_ECOLI : 235- 250: mgltp LeGLvMGtrsGdidp-A iifhl ACKA_HAEIN : 232- 247: mgltp LeGLvMGtrcGdidp-A ivfyl ACKA_METTE : 233- 248: mgftp LeGLaMGtrcGsidp-A ivpfl BUK_CLOAB : 179- 192: yenln LvVVhMGg--Gvsvg-A hnhgk YHAA_ECOLI : 228- 244: mgmtp LeGLmMGtrsGdvdfgA mswva R 18: 21.6243 6( 6) G-x-G-x(0,1)-E-N-x-[ANSV]-x-[IV] Occurences: 6(6) ACKA_BACSU : 329- 337: iifta GiG-ENsVeV rervl ACKA_ECOLI : 333- 341: vvftg GiG-ENaAmV relsl ACKA_HAEIN : 333- 341: iaftg GiG-ENsAhV relal ACKA_METTE : 331- 339: vvfta GiG-ENsAsI rkril BUK_CLOAB : 171- 180: ygkes GqGyENlNlV vvhmg YHAA_ECOLI : 326- 334: iiftg GiG-ENsSlI rrlvm S 19: 21.0204 6( 6) V-x(1,2)-T-x-E-x(4)-A-x(2)-[AST]-x(2)-[ILPV] Occurences: 6(6) ACKA_BACSU : 286- 302: dlrdi VeaTkEgnerAetAleV fasri ACKA_ECOLI : 382- 398: trpav VipTnEelviAqdAsrL ta ACKA_HAEIN : 383- 399: afkai VlpTnEelviAqdTakL cf ACKA_METTE : 379- 395: kvrvf VipTnEelaiAreTkeI vetev BUK_CLOAB : 131- 146: fivdp Vv-TdEladvArlSgvP elprk YHAA_ECOLI : 376- 392: rvica VipTnEekmiAldAihL gkvna T 20: 19.3503 6( 6) G-G-x(4,5)-S-x(2,4)-D-E Occurences: 6(6) ACKA_BACSU : 93- 106: hrvvh GGekfsdSvlltDE tikei ACKA_ECOLI : 95- 107: hrivh GGekytsSvvi-DE sviqg ACKA_ECOLI : 95- 107: hrivh GGekyt-SsvviDE sviqg ACKA_HAEIN : 92- 105: hrivh GGekytqSvivtDE vvkgi ACKA_METTE : 95- 107: hrvvh GGekfttSaly-DE gveka BUK_CLOAB : 110- 120: hasnl GGiiak-Sig--DE lnips YHAA_ECOLI : 90- 103: hriah GGsifteSaiitDE vidni Number of patterns evaluated by Pratt:11582 Total running time: 7 seconds