------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file ACBP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ACBP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACBP_ANAPL 103 ACBP_BOVIN 86 ACBP_DROME 86 ACBP_HUMAN 86 ACBP_MANSE 90 ACBP_MOUSE 86 ACBP_PIG 86 ACBP_RANRI 87 ACBP_RAT 86 ACBP_YEAST 87 ENDR_BOVIN 533 Pratt run started at Thu Feb 6 18:28:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.0203 16( 11) E-x(0,2)-L-x(0,2)-Y-x(3)-K-Q-x(3)-G 2: 20.3503 13( 11) L-x(2,3)-Y-x(3)-K-Q-x(3)-G 3: 19.3503 19( 11) K-x(1,3)-K-x(3)-W-x(3,4)-G-x(5)-A 4: 16.6802 11( 11) Y-x(3)-K-Q-x(3)-G 5: 16.1802 11( 11) G-x(1,2)-S-x-E-x-A 6: 16.1802 11( 11) G-x(3,4)-E-x-A-x(3)-Y 7: 16.1802 11( 11) K-x(3)-W-x(3,4)-G-x(5)-A 8: 15.6802 11( 11) K-x(0,2)-E-x-A-x(3)-Y 9: 15.6802 17( 11) K-x(0,2)-G-x-S-x-E 10: 15.6802 11( 11) K-x(2,3)-W-x(3,4)-G-x(5)-A 11: 15.1802 11( 11) K-x(3)-W-x(3,4)-G-x(0,2)-K 12: 15.1802 11( 11) K-x(0,2)-Q-x(3)-G-x(0,1)-D 13: 15.1802 11( 11) V-x(2)-L-x(3,5)-P-x(1,2)-D 14: 15.1802 11( 11) A-x(2)-V-x(2,3)-L-x(0,2)-K 15: 14.6802 12( 11) G-x(2)-D-x(2,4)-G-x(2,4)-K 16: 12.5102 11( 11) E-x-A-x(3)-Y 17: 12.5102 11( 11) S-x-E-x-A 18: 12.5102 11( 11) G-x-S-x-E 19: 12.5102 11( 11) L-x(5)-A-K 20: 12.5102 11( 11) K-Q-x(3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 43.7653 16( 11) E-x(0,2)-L-x(0,2)-Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] B 2: 41.0953 13( 11) L-x(2,3)-Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] C 3: 37.4984 19( 11) K-x(1,3)-K-x-[DEG]-x-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] D 4: 37.4252 11( 11) Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] E 5: 32.9105 11( 11) G-x(3,4)-E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] F 6: 32.4105 11( 11) K-x(0,2)-E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] G 7: 31.6777 11( 11) K-x(3)-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] H 8: 31.1777 11( 11) K-x(2,3)-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] I 9: 29.2405 11( 11) E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] J 10: 28.2191 11( 11) K-x(0,2)-Q-[ASV]-[GST]-[ASV]-G-x(0,1)-D-x-[DEN]-x(4)-[DGP] K 11: 28.2011 11( 11) G-x(1,2)-S-x-E-[ADENS]-A-x(2)-[AET]-x-[IPV]-x(2)-[APV]-[DEHK] L 12: 27.7800 11( 11) K-x-[DEG]-x-W-x(3,4)-G-x(0,2)-K-x-[DNQS]-[AE]-x(2)-[AEQST]-x(4)-[ATV] M 13: 27.4773 11( 11) K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] N 14: 24.5311 11( 11) S-x-E-[ADENS]-A-x(2)-[AET]-x-[IPV]-x(2)-[APV]-[DEHK] O 15: 23.4440 17( 11) K-x(0,2)-G-x-S-x-E-x-[AS]-x(4)-[GIV]-x(3)-[DEHKR] P 16: 20.4160 11( 11) L-[ADV]-x(2)-[GLP]-x-A-K-x(2)-[ANS] Q 17: 20.2739 11( 11) G-x-S-x-E-x-[AS]-x(4)-[GIV]-x(3)-[DEHKR] R 18: 19.9606 11( 11) A-x(2)-V-x(2,3)-L-x(0,2)-K-x(2)-[DPST]-x-[DEQ] S 19: 17.8308 19( 11) K-x(1,3)-K-x-[DEG]-x-W-x(3,4)-G T 20: 16.9036 12( 11) G-x(2)-D-x(2,4)-G-x(2,4)-K-x-[DEKR] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 43.7653 16( 11) E-x(0,2)-L-x(0,2)-Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] Occurences: 16(11) ACBP_ANAPL : 43- 62: deelk E--L--YGfYKQATvGDiniEcpG mldlk ACBP_BOVIN : 22- 45: tkpad EemLfiYShYKQATvGDintErpG mldfk ACBP_BOVIN : 23- 45: kpade Em-LfiYShYKQATvGDintErpG mldfk ACBP_DROME : 24- 46: rpsdd Ef-LqlYAlFKQASvGDndtAkpG lldlk ACBP_HUMAN : 22- 45: tkpsd EemLfiYGhYKQATvGDintErpG mldft ACBP_HUMAN : 23- 45: kpsde Em-LfiYGhYKQATvGDintErpG mldft ACBP_MANSE : 28- 47: dndll E--L--YAlFKQASaGDadpAnrP glldl ACBP_MOUSE : 22- 45: tqptd EemLfiYShFKQATvGDvntDrpG lldlk ACBP_MOUSE : 23- 45: qptde Em-LfiYShFKQATvGDvntDrpG lldlk ACBP_PIG : 23- 45: kpadd Em-LfiYShYKQATvGDintErpG ildlk ACBP_RANRI : 27- 46: ddelk E--L--YGlYKQSTvGDiniEcpG mldlk ACBP_RAT : 22- 45: tqptd EemLfiYShFKQATvGDvntDrpG lldlk ACBP_RAT : 23- 45: qptde Em-LfiYShFKQATvGDvntDrpG lldlk ACBP_YEAST : 24- 46: kpstd El-LelYAlYKQATvGDndkEkpG ifnmk ACBP_YEAST : 27- 46: tdell E--L--YAlYKQATvGDndkEkpG ifnmk ENDR_BOVIN : 67- 90: fqptn EmmLkfYSfYKQATeGPcklSkpG fwdpv B 2: 41.0953 13( 11) L-x(2,3)-Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] Occurences: 13(11) ACBP_ANAPL : 41- 62: ptdee LkelYGfYKQATvGDiniEcpG mldlk ACBP_BOVIN : 25- 45: adeem Lfi-YShYKQATvGDintErpG mldfk ACBP_DROME : 26- 46: sddef Lql-YAlFKQASvGDndtAkpG lldlk ACBP_HUMAN : 25- 45: sdeem Lfi-YGhYKQATvGDintErpG mldft ACBP_MANSE : 26- 47: psdnd LlelYAlFKQASaGDadpAnrP glldl ACBP_MANSE : 27- 47: sdndl Lel-YAlFKQASaGDadpAnrP glldl ACBP_MOUSE : 25- 45: tdeem Lfi-YShFKQATvGDvntDrpG lldlk ACBP_PIG : 25- 45: addem Lfi-YShYKQATvGDintErpG ildlk ACBP_RANRI : 25- 46: ptdde LkelYGlYKQSTvGDiniEcpG mldlk ACBP_RAT : 25- 45: tdeem Lfi-YShFKQATvGDvntDrpG lldlk ACBP_YEAST : 25- 46: pstde LlelYAlYKQATvGDndkEkpG ifnmk ACBP_YEAST : 26- 46: stdel Lel-YAlYKQATvGDndkEkpG ifnmk ENDR_BOVIN : 70- 90: tnemm Lkf-YSfYKQATeGPcklSkpG fwdpv C 3: 37.4984 19( 11) K-x(1,3)-K-x-[DEG]-x-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] Occurences: 19(11) ACBP_ANAPL : 67- 96: gmldl KgkaKwEaWnlkkGiskeDAmnAyISkAKT mveky ACBP_ANAPL : 69- 96: ldlkg Ka--KwEaWnlkkGiskeDAmnAyISkAKT mveky ACBP_BOVIN : 50- 79: gmldf KgkaKwDaWnelkGtskeDAmkAyIDkVEE lkkky ACBP_BOVIN : 52- 79: ldfkg Ka--KwDaWnelkGtskeDAmkAyIDkVEE lkkky ACBP_DROME : 51- 80: glldl KgkaKwEaWnkqkGksseAAqqEyITfVEG lvaky ACBP_DROME : 53- 80: ldlkg Ka--KwEaWnkqkGksseAAqqEyITfVEG lvaky ACBP_HUMAN : 52- 79: ldftg Ka--KwDaWnelkGtskeDAmkAyINkVEE lkkky ACBP_MANSE : 53- 82: glldl KgkaKfDaWhkkaGlskeDAqkAyIAkVES liasl ACBP_MANSE : 55- 82: ldlkg Ka--KfDaWhkkaGlskeDAqkAyIAkVES liasl ACBP_MOUSE : 50- 79: glldl KgkaKwDsWnklkGtskeSAmkTyVEkVDE lkkky ACBP_MOUSE : 52- 79: ldlkg Ka--KwDsWnklkGtskeSAmkTyVEkVDE lkkky ACBP_PIG : 50- 79: gildl KgkaKwDaWnglkGtskeDAmkAyINkVEE lkkky ACBP_PIG : 52- 79: ldlkg Ka--KwDaWnglkGtskeDAmkAyINkVEE lkkky ACBP_RANRI : 51- 80: gmldl KgkaKwDaWnlkkGlskeDAmsAyVSkAHE lieky ACBP_RANRI : 53- 80: ldlkg Ka--KwDaWnlkkGlskeDAmsAyVSkAHE lieky ACBP_RAT : 50- 79: glldl KgkaKwDsWnklkGtskeNAmkTyVEkVEE lkkky ACBP_RAT : 52- 79: ldlkg Ka--KwDsWnklkGtskeNAmkTyVEkVEE lkkky ACBP_YEAST : 51- 80: gifnm KdryKwEaWenlkGksqeDAekEyIAlVDQ liaky ENDR_BOVIN : 85- 112: tegpc Kls-KpGfWdpv-GrykwDAwsSlGDmTKE eamia D 4: 37.4252 11( 11) Y-[AGS]-x-[FY]-K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] Occurences: 11(11) ACBP_ANAPL : 45- 62: elkel YGfYKQATvGDiniEcpG mldlk ACBP_BOVIN : 28- 45: emlfi YShYKQATvGDintErpG mldfk ACBP_DROME : 29- 46: eflql YAlFKQASvGDndtAkpG lldlk ACBP_HUMAN : 28- 45: emlfi YGhYKQATvGDintErpG mldft ACBP_MANSE : 30- 47: dllel YAlFKQASaGDadpAnrP glldl ACBP_MOUSE : 28- 45: emlfi YShFKQATvGDvntDrpG lldlk ACBP_PIG : 28- 45: emlfi YShYKQATvGDintErpG ildlk ACBP_RANRI : 29- 46: elkel YGlYKQSTvGDiniEcpG mldlk ACBP_RAT : 28- 45: emlfi YShFKQATvGDvntDrpG lldlk ACBP_YEAST : 29- 46: ellel YAlYKQATvGDndkEkpG ifnmk ENDR_BOVIN : 73- 90: mmlkf YSfYKQATeGPcklSkpG fwdpv E 5: 32.9105 11( 11) G-x(3,4)-E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] Occurences: 11(11) ACBP_ANAPL : 80- 102: wnlkk Gisk-EDAmnAYISkaKtMvekyG i ACBP_BOVIN : 63- 85: wnelk Gtsk-EDAmkAYIDkvEeLkkkyG i ACBP_DROME : 64- 86: wnkqk Gkss-EAAqqEYITfvEgLvakyA ACBP_HUMAN : 63- 85: wnelk Gtsk-EDAmkAYINkvEeLkkkyG i ACBP_MANSE : 66- 88: whkka Glsk-EDAqkAYIAkvEsLiaslG lq ACBP_MOUSE : 63- 85: wnklk Gtsk-ESAmkTYVEkvDeLkkkyG i ACBP_PIG : 63- 85: wnglk Gtsk-EDAmkAYINkvEeLkkkyG i ACBP_RANRI : 64- 86: wnlkk Glsk-EDAmsAYVSkaHeLiekyG l ACBP_RAT : 63- 85: wnklk Gtsk-ENAmkTYVEkvEeLkkkyG i ACBP_YEAST : 64- 86: wenlk Gksq-EDAekEYIAlvDqLiakyS s ENDR_BOVIN : 107- 130: awssl GdmtkEEAmiAYVEemKkIletmP mtekv F 6: 32.4105 11( 11) K-x(0,2)-E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] Occurences: 11(11) ACBP_ANAPL : 83- 102: kkgis K--EDAmnAYISkaKtMvekyG i ACBP_BOVIN : 66- 85: lkgts K--EDAmkAYIDkvEeLkkkyG i ACBP_DROME : 65- 86: nkqkg KssEAAqqEYITfvEgLvakyA ACBP_HUMAN : 66- 85: lkgts K--EDAmkAYINkvEeLkkkyG i ACBP_MANSE : 69- 88: kagls K--EDAqkAYIAkvEsLiaslG lq ACBP_MOUSE : 66- 85: lkgts K--ESAmkTYVEkvDeLkkkyG i ACBP_PIG : 66- 85: lkgts K--EDAmkAYINkvEeLkkkyG i ACBP_RANRI : 67- 86: kkgls K--EDAmsAYVSkaHeLiekyG l ACBP_RAT : 66- 85: lkgts K--ENAmkTYVEkvEeLkkkyG i ACBP_YEAST : 65- 86: enlkg KsqEDAekEYIAlvDqLiakyS s ENDR_BOVIN : 111- 130: lgdmt K--EEAmiAYVEemKkIletmP mtekv G 7: 31.6777 11( 11) K-x(3)-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] Occurences: 11(11) ACBP_ANAPL : 71- 96: lkgka KweaWnlkkGiskeDAmnAyISkAKT mveky ACBP_BOVIN : 54- 79: fkgka KwdaWnelkGtskeDAmkAyIDkVEE lkkky ACBP_DROME : 55- 80: lkgka KweaWnkqkGksseAAqqEyITfVEG lvaky ACBP_HUMAN : 54- 79: ftgka KwdaWnelkGtskeDAmkAyINkVEE lkkky ACBP_MANSE : 57- 82: lkgka KfdaWhkkaGlskeDAqkAyIAkVES liasl ACBP_MOUSE : 54- 79: lkgka KwdsWnklkGtskeSAmkTyVEkVDE lkkky ACBP_PIG : 54- 79: lkgka KwdaWnglkGtskeDAmkAyINkVEE lkkky ACBP_RANRI : 55- 80: lkgka KwdaWnlkkGlskeDAmsAyVSkAHE lieky ACBP_RAT : 54- 79: lkgka KwdsWnklkGtskeNAmkTyVEkVEE lkkky ACBP_YEAST : 55- 80: mkdry KweaWenlkGksqeDAekEyIAlVDQ liaky ENDR_BOVIN : 88- 112: pckls KpgfWdpv-GrykwDAwsSlGDmTKE eamia H 8: 31.1777 11( 11) K-x(2,3)-W-x(3,4)-G-x(4)-[ADNS]-A-x(2)-[AEST]-x-[GIV]-[ADENST]-x-[ATV]-[DEHK]-[EGQST] Occurences: 11(11) ACBP_ANAPL : 71- 96: lkgka KweaWnlkkGiskeDAmnAyISkAKT mveky ACBP_BOVIN : 54- 79: fkgka KwdaWnelkGtskeDAmkAyIDkVEE lkkky ACBP_DROME : 55- 80: lkgka KweaWnkqkGksseAAqqEyITfVEG lvaky ACBP_HUMAN : 54- 79: ftgka KwdaWnelkGtskeDAmkAyINkVEE lkkky ACBP_MANSE : 57- 82: lkgka KfdaWhkkaGlskeDAqkAyIAkVES liasl ACBP_MOUSE : 54- 79: lkgka KwdsWnklkGtskeSAmkTyVEkVDE lkkky ACBP_PIG : 54- 79: lkgka KwdaWnglkGtskeDAmkAyINkVEE lkkky ACBP_RANRI : 55- 80: lkgka KwdaWnlkkGlskeDAmsAyVSkAHE lieky ACBP_RAT : 54- 79: lkgka KwdsWnklkGtskeNAmkTyVEkVEE lkkky ACBP_YEAST : 55- 80: mkdry KweaWenlkGksqeDAekEyIAlVDQ liaky ENDR_BOVIN : 88- 112: pckls KpgfWdpv-GrykwDAwsSlGDmTKE eamia I 9: 29.2405 11( 11) E-[ADENS]-A-x(2)-[AET]-Y-[IV]-[ADENST]-x(2)-[DEHK]-x-[ILM]-x(4)-[AGPS] Occurences: 11(11) ACBP_ANAPL : 84- 102: kgisk EDAmnAYISkaKtMvekyG i ACBP_BOVIN : 67- 85: kgtsk EDAmkAYIDkvEeLkkkyG i ACBP_DROME : 68- 86: kgkss EAAqqEYITfvEgLvakyA ACBP_HUMAN : 67- 85: kgtsk EDAmkAYINkvEeLkkkyG i ACBP_MANSE : 70- 88: aglsk EDAqkAYIAkvEsLiaslG lq ACBP_MOUSE : 67- 85: kgtsk ESAmkTYVEkvDeLkkkyG i ACBP_PIG : 67- 85: kgtsk EDAmkAYINkvEeLkkkyG i ACBP_RANRI : 68- 86: kglsk EDAmsAYVSkaHeLiekyG l ACBP_RAT : 67- 85: kgtsk ENAmkTYVEkvEeLkkkyG i ACBP_YEAST : 68- 86: kgksq EDAekEYIAlvDqLiakyS s ENDR_BOVIN : 112- 130: gdmtk EEAmiAYVEemKkIletmP mtekv J 10: 28.2191 11( 11) K-x(0,2)-Q-[ASV]-[GST]-[ASV]-G-x(0,1)-D-x-[DEN]-x(4)-[DGP] Occurences: 11(11) ACBP_ANAPL : 49- 62: lygfy K--QATVG-DiNiecpG mldlk ACBP_BOVIN : 32- 45: iyshy K--QATVG-DiNterpG mldfk ACBP_DROME : 33- 46: lyalf K--QASVG-DnDtakpG lldlk ACBP_HUMAN : 32- 45: iyghy K--QATVG-DiNterpG mldft ACBP_MANSE : 34- 47: lyalf K--QASAG-DaDpanrP glldl ACBP_MOUSE : 32- 45: iyshf K--QATVG-DvNtdrpG lldlk ACBP_PIG : 32- 45: iyshy K--QATVG-DiNterpG ildlk ACBP_RANRI : 33- 46: lygly K--QSTVG-DiNiecpG mldlk ACBP_RAT : 32- 45: iyshf K--QATVG-DvNtdrpG lldlk ACBP_YEAST : 33- 46: lyaly K--QATVG-DnDkekpG ifnmk ENDR_BOVIN : 423- 439: lsegs KgrQVGSGgDgErwgsD rgsrg K 11: 28.2011 11( 11) G-x(1,2)-S-x-E-[ADENS]-A-x(2)-[AET]-x-[IPV]-x(2)-[APV]-[DEHK] Occurences: 11(11) ACBP_ANAPL : 80- 95: wnlkk Gi-SkEDAmnAyIskAK tmvek ACBP_BOVIN : 63- 78: wnelk Gt-SkEDAmkAyIdkVE elkkk ACBP_DROME : 64- 79: wnkqk Gk-SsEAAqqEyItfVE glvak ACBP_HUMAN : 63- 78: wnelk Gt-SkEDAmkAyInkVE elkkk ACBP_MANSE : 66- 81: whkka Gl-SkEDAqkAyIakVE slias ACBP_MOUSE : 63- 78: wnklk Gt-SkESAmkTyVekVD elkkk ACBP_PIG : 63- 78: wnglk Gt-SkEDAmkAyInkVE elkkk ACBP_RANRI : 64- 79: wnlkk Gl-SkEDAmsAyVskAH eliek ACBP_RAT : 63- 78: wnklk Gt-SkENAmkTyVekVE elkkk ACBP_YEAST : 64- 79: wenlk Gk-SqEDAekEyIalVD qliak ENDR_BOVIN : 198- 214: essds GaeSeEEAaqEdPkrPE prdsd L 12: 27.7800 11( 11) K-x-[DEG]-x-W-x(3,4)-G-x(0,2)-K-x-[DNQS]-[AE]-x(2)-[AEQST]-x(4)-[ATV] Occurences: 11(11) ACBP_ANAPL : 71- 94: lkgka KwEaWnlkkGisKeDAmnAyiskA ktmve ACBP_BOVIN : 54- 77: fkgka KwDaWnelkGtsKeDAmkAyidkV eelkk ACBP_DROME : 55- 76: lkgka KwEaWnkqkG--KsSEaaQqeyiT fvegl ACBP_HUMAN : 54- 77: ftgka KwDaWnelkGtsKeDAmkAyinkV eelkk ACBP_MANSE : 57- 80: lkgka KfDaWhkkaGlsKeDAqkAyiakV eslia ACBP_MOUSE : 54- 77: lkgka KwDsWnklkGtsKeSAmkTyvekV delkk ACBP_PIG : 54- 77: lkgka KwDaWnglkGtsKeDAmkAyinkV eelkk ACBP_RANRI : 55- 78: lkgka KwDaWnlkkGlsKeDAmsAyvskA helie ACBP_RAT : 54- 77: lkgka KwDsWnklkGtsKeNAmkTyvekV eelkk ACBP_YEAST : 55- 76: mkdry KwEaWenlkG--KsQEdaEkeyiA lvdql ENDR_BOVIN : 88- 110: pckls KpGfWdpv-GryKwDAwsSlgdmT keeam M 13: 27.4773 11( 11) K-Q-[AS]-[ST]-x-G-[DP]-x(3)-[ADES]-x(2)-[GP] Occurences: 11(11) ACBP_ANAPL : 49- 62: lygfy KQATvGDiniEcpG mldlk ACBP_BOVIN : 32- 45: iyshy KQATvGDintErpG mldfk ACBP_DROME : 33- 46: lyalf KQASvGDndtAkpG lldlk ACBP_HUMAN : 32- 45: iyghy KQATvGDintErpG mldft ACBP_MANSE : 34- 47: lyalf KQASaGDadpAnrP glldl ACBP_MOUSE : 32- 45: iyshf KQATvGDvntDrpG lldlk ACBP_PIG : 32- 45: iyshy KQATvGDintErpG ildlk ACBP_RANRI : 33- 46: lygly KQSTvGDiniEcpG mldlk ACBP_RAT : 32- 45: iyshf KQATvGDvntDrpG lldlk ACBP_YEAST : 33- 46: lyaly KQATvGDndkEkpG ifnmk ENDR_BOVIN : 77- 90: fysfy KQATeGPcklSkpG fwdpv N 14: 24.5311 11( 11) S-x-E-[ADENS]-A-x(2)-[AET]-x-[IPV]-x(2)-[APV]-[DEHK] Occurences: 11(11) ACBP_ANAPL : 82- 95: lkkgi SkEDAmnAyIskAK tmvek ACBP_BOVIN : 65- 78: elkgt SkEDAmkAyIdkVE elkkk ACBP_DROME : 66- 79: kqkgk SsEAAqqEyItfVE glvak ACBP_HUMAN : 65- 78: elkgt SkEDAmkAyInkVE elkkk ACBP_MANSE : 68- 81: kkagl SkEDAqkAyIakVE slias ACBP_MOUSE : 65- 78: klkgt SkESAmkTyVekVD elkkk ACBP_PIG : 65- 78: glkgt SkEDAmkAyInkVE elkkk ACBP_RANRI : 66- 79: lkkgl SkEDAmsAyVskAH eliek ACBP_RAT : 65- 78: klkgt SkENAmkTyVekVE elkkk ACBP_YEAST : 66- 79: nlkgk SqEDAekEyIalVD qliak ENDR_BOVIN : 201- 214: dsgae SeEEAaqEdPkrPE prdsd O 15: 23.4440 17( 11) K-x(0,2)-G-x-S-x-E-x-[AS]-x(4)-[GIV]-x(3)-[DEHKR] Occurences: 17(11) ACBP_ANAPL : 78- 95: eawnl Kk-GiSkEdAmnayIskaK tmvek ACBP_ANAPL : 79- 95: awnlk K--GiSkEdAmnayIskaK tmvek ACBP_BOVIN : 62- 78: awnel K--GtSkEdAmkayIdkvE elkkk ACBP_DROME : 61- 79: weawn KqkGkSsEaAqqeyItfvE glvak ACBP_DROME : 63- 79: awnkq K--GkSsEaAqqeyItfvE glvak ACBP_HUMAN : 62- 78: awnel K--GtSkEdAmkayInkvE elkkk ACBP_MANSE : 63- 81: fdawh KkaGlSkEdAqkayIakvE slias ACBP_MANSE : 64- 81: dawhk Ka-GlSkEdAqkayIakvE slias ACBP_MOUSE : 60- 78: wdswn KlkGtSkEsAmktyVekvD elkkk ACBP_MOUSE : 62- 78: swnkl K--GtSkEsAmktyVekvD elkkk ACBP_PIG : 62- 78: awngl K--GtSkEdAmkayInkvE elkkk ACBP_RANRI : 62- 79: dawnl Kk-GlSkEdAmsayVskaH eliek ACBP_RANRI : 63- 79: awnlk K--GlSkEdAmsayVskaH eliek ACBP_RAT : 60- 78: wdswn KlkGtSkEnAmktyVekvE elkkk ACBP_RAT : 62- 78: swnkl K--GtSkEnAmktyVekvE elkkk ACBP_YEAST : 63- 79: awenl K--GkSqEdAekeyIalvD qliak ENDR_BOVIN : 396- 414: aphre KraGeSeEfSnirrGrghR mqhls P 16: 20.4160 11( 11) L-[ADV]-x(2)-[GLP]-x-A-K-x(2)-[ANS] Occurences: 11(11) ACBP_ANAPL : 64- 74: ecpgm LDlkGkAKweA wnlkk ACBP_BOVIN : 47- 57: erpgm LDfkGkAKwdA wnelk ACBP_DROME : 48- 58: akpgl LDlkGkAKweA wnkqk ACBP_HUMAN : 47- 57: erpgm LDftGkAKwdA wnelk ACBP_MANSE : 50- 60: nrpgl LDlkGkAKfdA whkka ACBP_MOUSE : 47- 57: drpgl LDlkGkAKwdS wnklk ACBP_PIG : 47- 57: erpgi LDlkGkAKwdA wnglk ACBP_RANRI : 48- 58: ecpgm LDlkGkAKwdA wnlkk ACBP_RAT : 47- 57: drpgl LDlkGkAKwdS wnklk ACBP_YEAST : 77- 87: keyia LVdqLiAKysS ENDR_BOVIN : 179- 189: dlgnv LAstPnAKtvN gkaes Q 17: 20.2739 11( 11) G-x-S-x-E-x-[AS]-x(4)-[GIV]-x(3)-[DEHKR] Occurences: 11(11) ACBP_ANAPL : 80- 95: wnlkk GiSkEdAmnayIskaK tmvek ACBP_BOVIN : 63- 78: wnelk GtSkEdAmkayIdkvE elkkk ACBP_DROME : 64- 79: wnkqk GkSsEaAqqeyItfvE glvak ACBP_HUMAN : 63- 78: wnelk GtSkEdAmkayInkvE elkkk ACBP_MANSE : 66- 81: whkka GlSkEdAqkayIakvE slias ACBP_MOUSE : 63- 78: wnklk GtSkEsAmktyVekvD elkkk ACBP_PIG : 63- 78: wnglk GtSkEdAmkayInkvE elkkk ACBP_RANRI : 64- 79: wnlkk GlSkEdAmsayVskaH eliek ACBP_RAT : 63- 78: wnklk GtSkEnAmktyVekvE elkkk ACBP_YEAST : 64- 79: wenlk GkSqEdAekeyIalvD qliak ENDR_BOVIN : 399- 414: rekra GeSeEfSnirrGrghR mqhls R 18: 19.9606 11( 11) A-x(2)-V-x(2,3)-L-x(0,2)-K-x(2)-[DPST]-x-[DEQ] Occurences: 11(11) ACBP_ANAPL : 26- 38: dfdea AeeVkk-L--KtrPtD eelke ACBP_BOVIN : 9- 21: efdka AeeVkh-L--KtkPaD eemlf ACBP_BOVIN : 9- 23: efdka AeeVkh-LktKpaDeE mlfiy ACBP_DROME : 10- 23: qfnaa AekVks-Lt-KrpSdD eflql ACBP_HUMAN : 9- 21: efeka AeeVrh-L--KtkPsD eemlf ACBP_HUMAN : 9- 23: efeka AeeVrh-LktKpsDeE mlfiy ACBP_MANSE : 11- 23: qfdqa AsnVrn-L--KslPsD ndlle ACBP_MOUSE : 9- 21: efdka AeeVkr-L--KtqPtD eemlf ACBP_PIG : 9- 21: efeka AeeVkn-L--KtkPaD demlf ACBP_PIG : 9- 23: efeka AeeVkn-LktKpaDdE mlfiy ACBP_RANRI : 10- 22: dfdka AgdVkk-L--KtkPtD delke ACBP_RANRI : 10- 24: dfdka AgdVkk-LktKptDdE lkely ACBP_RAT : 9- 21: dfdka AeeVkr-L--KtqPtD eemlf ACBP_YEAST : 10- 24: lfeek AkaVne-LptKpsTdE llely ENDR_BOVIN : 49- 63: trfea AvkViqsLp-KngSfQ ptnem S 19: 17.8308 19( 11) K-x(1,3)-K-x-[DEG]-x-W-x(3,4)-G Occurences: 19(11) ACBP_ANAPL : 67- 80: gmldl KgkaKwEaWnlkkG isked ACBP_ANAPL : 69- 80: ldlkg Ka--KwEaWnlkkG isked ACBP_BOVIN : 50- 63: gmldf KgkaKwDaWnelkG tsked ACBP_BOVIN : 52- 63: ldfkg Ka--KwDaWnelkG tsked ACBP_DROME : 51- 64: glldl KgkaKwEaWnkqkG kssea ACBP_DROME : 53- 64: ldlkg Ka--KwEaWnkqkG kssea ACBP_HUMAN : 52- 63: ldftg Ka--KwDaWnelkG tsked ACBP_MANSE : 53- 66: glldl KgkaKfDaWhkkaG lsked ACBP_MANSE : 55- 66: ldlkg Ka--KfDaWhkkaG lsked ACBP_MOUSE : 50- 63: glldl KgkaKwDsWnklkG tskes ACBP_MOUSE : 52- 63: ldlkg Ka--KwDsWnklkG tskes ACBP_PIG : 50- 63: gildl KgkaKwDaWnglkG tsked ACBP_PIG : 52- 63: ldlkg Ka--KwDaWnglkG tsked ACBP_RANRI : 51- 64: gmldl KgkaKwDaWnlkkG lsked ACBP_RANRI : 53- 64: ldlkg Ka--KwDaWnlkkG lsked ACBP_RAT : 50- 63: glldl KgkaKwDsWnklkG tsken ACBP_RAT : 52- 63: ldlkg Ka--KwDsWnklkG tsken ACBP_YEAST : 51- 64: gifnm KdryKwEaWenlkG ksqed ENDR_BOVIN : 85- 96: tegpc Kls-KpGfWdpv-G rykwd T 20: 16.9036 12( 11) G-x(2)-D-x(2,4)-G-x(2,4)-K-x-[DEKR] Occurences: 12(11) ACBP_ANAPL : 62- 73: niecp GmlDlk--Gka--KwE awnlk ACBP_BOVIN : 45- 56: nterp GmlDfk--Gka--KwD awnel ACBP_DROME : 38- 53: kqasv GdnDtakpGlldlKgK akwea ACBP_DROME : 46- 57: dtakp GllDlk--Gka--KwE awnkq ACBP_HUMAN : 45- 56: nterp GmlDft--Gka--KwD awnel ACBP_MANSE : 48- 59: panrp GllDlk--Gka--KfD awhkk ACBP_MOUSE : 45- 56: ntdrp GllDlk--Gka--KwD swnkl ACBP_PIG : 45- 56: nterp GilDlk--Gka--KwD awngl ACBP_RANRI : 46- 57: niecp GmlDlk--Gka--KwD awnlk ACBP_RAT : 45- 56: ntdrp GllDlk--Gka--KwD swnkl ACBP_YEAST : 38- 53: kqatv GdnDkekpGifnmKdR ykwea ENDR_BOVIN : 90- 101: klskp GfwDpv--Gry--KwD awssl Number of patterns evaluated by Pratt:578 Total running time: 1 seconds