------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file ABC2_MEMBRANE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ABC2_MEMBRANE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BEX1_HAEIN 265 BEX2_HAEIN 265 BEX3_HAEIN 265 CTRC_NEIME 265 DRRB_STRPE 283 KPM1_ECOLI 258 KPM2_ECOLI 258 NODJ_BRAJA 262 NODJ_RHILT 262 NODJ_RHILV 259 VEXB_SALTI 264 YHHJ_ECOLI 374 Pratt run started at Thu Feb 6 18:27:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 21( 12) L-x(2)-L-x(3)-L 2: 12.0102 20( 12) L-x(2)-L-x(1,2)-G 3: 12.0102 19( 12) L-x(2,3)-L-x(2)-G 4: 12.0102 26( 12) L-x(2,3)-L-x(3)-L 5: 12.0102 16( 12) L-x(1,2)-L-x(2)-G 6: 12.0102 16( 12) A-x-F-x(4,5)-L 7: 12.0102 16( 12) L-A-x(2,3)-L 8: 12.0102 30( 12) L-x(2)-L-x(3,4)-L 9: 12.0102 16( 12) V-x(1,2)-L-x(2)-L 10: 12.0102 16( 12) L-x(4)-L-x(2,3)-V 11: 12.0102 27( 12) L-x(1,2)-L-L 12: 12.0102 12( 12) L-x(3,4)-G-L 13: 12.0102 21( 12) L-x(3,4)-L-L 14: 12.0102 27( 12) L-x(1,2)-L-x(3)-L 15: 12.0102 23( 12) V-x(3,4)-L-x-L 16: 12.0102 14( 12) L-x(4)-I-x(0,1)-V 17: 12.0102 17( 12) I-x(4)-L-x(3,4)-L 18: 12.0102 23( 12) L-x(0,1)-G-L 19: 12.0102 19( 12) A-x-L-x(0,1)-L 20: 12.0102 20( 12) A-x(1,2)-L-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 15.1865 15( 12) L-x(2)-L-[GIL]-x(2)-L B 2: 14.6865 17( 12) L-x(2,3)-L-[GIL]-x(2)-L C 3: 14.6865 19( 12) L-x(1,2)-L-[GIL]-x(2)-L D 4: 14.2509 19( 12) L-x(0,1)-G-L-[GILV] E 5: 13.9337 16( 12) V-x(1,2)-L-x(2)-L-[AGILP] F 6: 13.9276 18( 12) L-x-[GILPV]-L-x(3,4)-L G 7: 13.9189 15( 12) L-A-x(2,3)-L-x(2)-[AGILV] H 8: 12.0102 20( 12) L-x(2)-L-x(1,2)-G I 9: 12.0102 19( 12) L-x(2,3)-L-x(2)-G J 10: 12.0102 16( 12) L-x(1,2)-L-x(2)-G K 11: 12.0102 16( 12) A-x-F-x(4,5)-L L 12: 12.0102 16( 12) L-x(4)-L-x(2,3)-V M 13: 12.0102 27( 12) L-x(1,2)-L-L N 14: 12.0102 12( 12) L-x(3,4)-G-L O 15: 12.0102 21( 12) L-x(3,4)-L-L P 16: 12.0102 23( 12) V-x(3,4)-L-x-L Q 17: 12.0102 14( 12) L-x(4)-I-x(0,1)-V R 18: 12.0102 17( 12) I-x(4)-L-x(3,4)-L S 19: 12.0102 19( 12) A-x-L-x(0,1)-L T 20: 12.0102 20( 12) A-x(1,2)-L-x-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 15.1865 15( 12) L-x(2)-L-[GIL]-x(2)-L Occurences: 15(12) BEX1_HAEIN : 245- 252: lvvsd LalLLlgL vmvkn BEX2_HAEIN : 245- 252: lvvsd LalLLmgL vmvkn BEX3_HAEIN : 245- 252: lvvsd LalLLlgL vmvkn CTRC_NEIME : 245- 252: ivlcn LvlLLfgL amvsk DRRB_STRPE : 60- 67: lidiv LmpLIflL mftyl KPM1_ECOLI : 43- 50: epsah LliLLgiL gyvmh KPM1_ECOLI : 175- 182: emqkv LpiLLkpL yfisc KPM2_ECOLI : 175- 182: emqkv LpiLLkpL yfisc NODJ_BRAJA : 32- 39: wrkva LasLLgnL adpit NODJ_BRAJA : 46- 53: dpitn LfgLGfgL glivg NODJ_RHILT : 32- 39: wkkaa LasLLghL aepli NODJ_RHILT : 46- 53: epliy LfgLGagL gvmvg NODJ_RHILV : 43- 50: dpviy LfgLGagL gvmvg VEXB_SALTI : 250- 257: satlf LagLIfhL icdte YHHJ_ECOLI : 258- 265: egsip LfmLGvaL slfat B 2: 14.6865 17( 12) L-x(2,3)-L-[GIL]-x(2)-L Occurences: 17(12) BEX1_HAEIN : 245- 252: lvvsd Lal-LLlgL vmvkn BEX2_HAEIN : 245- 252: lvvsd Lal-LLmgL vmvkn BEX3_HAEIN : 245- 252: lvvsd Lal-LLlgL vmvkn CTRC_NEIME : 245- 252: ivlcn Lvl-LLfgL amvsk DRRB_STRPE : 60- 67: lidiv Lmp-LIflL mftyl KPM1_ECOLI : 43- 50: epsah Lli-LLgiL gyvmh KPM1_ECOLI : 145- 153: flqlv LtwsLLiiL scgvg KPM1_ECOLI : 175- 182: emqkv Lpi-LLkpL yfisc KPM2_ECOLI : 145- 153: flqlv LtwsLLiiL scgig KPM2_ECOLI : 175- 182: emqkv Lpi-LLkpL yfisc NODJ_BRAJA : 32- 39: wrkva Las-LLgnL adpit NODJ_BRAJA : 46- 53: dpitn Lfg-LGfgL glivg NODJ_RHILT : 32- 39: wkkaa Las-LLghL aepli NODJ_RHILT : 46- 53: epliy Lfg-LGagL gvmvg NODJ_RHILV : 43- 50: dpviy Lfg-LGagL gvmvg VEXB_SALTI : 250- 257: satlf Lag-LIfhL icdte YHHJ_ECOLI : 258- 265: egsip Lfm-LGvaL slfat C 3: 14.6865 19( 12) L-x(1,2)-L-[GIL]-x(2)-L Occurences: 19(12) BEX1_HAEIN : 245- 252: lvvsd LalLLlgL vmvkn BEX2_HAEIN : 245- 252: lvvsd LalLLmgL vmvkn BEX3_HAEIN : 245- 252: lvvsd LalLLlgL vmvkn CTRC_NEIME : 245- 252: ivlcn LvlLLfgL amvsk DRRB_STRPE : 60- 67: lidiv LmpLIflL mftyl KPM1_ECOLI : 43- 50: epsah LliLLgiL gyvmh KPM1_ECOLI : 44- 50: psahl Li-LLgiL gyvmh KPM1_ECOLI : 175- 182: emqkv LpiLLkpL yfisc KPM2_ECOLI : 175- 182: emqkv LpiLLkpL yfisc NODJ_BRAJA : 32- 39: wrkva LasLLgnL adpit NODJ_BRAJA : 46- 53: dpitn LfgLGfgL glivg NODJ_RHILT : 32- 39: wkkaa LasLLghL aepli NODJ_RHILT : 46- 53: epliy LfgLGagL gvmvg NODJ_RHILT : 145- 151: gytqw Ls-LLyaL pvial NODJ_RHILV : 43- 50: dpviy LfgLGagL gvmvg NODJ_RHILV : 142- 148: gythw La-LLyaL pviai VEXB_SALTI : 250- 257: satlf LagLIfhL icdte YHHJ_ECOLI : 258- 265: egsip LfmLGvaL slfat YHHJ_ECOLI : 287- 293: rsmpq Lg-LLviL vllpl D 4: 14.2509 19( 12) L-x(0,1)-G-L-[GILV] Occurences: 19(12) BEX1_HAEIN : 164- 167: mfafg L-GLI icaia BEX1_HAEIN : 249- 253: dlall LlGLV mvknf BEX1_HAEIN : 250- 253: lalll L-GLV mvknf BEX2_HAEIN : 164- 167: mfafa L-GLI icava BEX2_HAEIN : 249- 253: dlall LmGLV mvknf BEX3_HAEIN : 164- 167: mfafa L-GLI icaia BEX3_HAEIN : 249- 253: dlall LlGLV mvknf BEX3_HAEIN : 250- 253: lalll L-GLV mvknf CTRC_NEIME : 164- 167: ffaig L-GLV icsia DRRB_STRPE : 152- 155: attvs L-GLL lgfra KPM1_ECOLI : 68- 72: fpvfl LnGLI pffif KPM2_ECOLI : 68- 72: fpvfl LnGLI pffif NODJ_BRAJA : 46- 50: dpitn LfGLG fglgl NODJ_BRAJA : 53- 56: glgfg L-GLI vgrve NODJ_BRAJA : 156- 160: iptia LtGLV fasla NODJ_RHILT : 46- 50: epliy LfGLG aglgv NODJ_RHILV : 43- 47: dpviy LfGLG aglgv VEXB_SALTI : 250- 254: satlf LaGLI fhlic YHHJ_ECOLI : 287- 290: rsmpq L-GLL vilvl E 5: 13.9337 16( 12) V-x(1,2)-L-x(2)-L-[AGILP] Occurences: 16(12) BEX1_HAEIN : 242- 249: igflv VsdLalLL lglvm BEX2_HAEIN : 242- 249: igflv VsdLalLL mglvm BEX3_HAEIN : 242- 249: igflv VsdLalLL lglvm CTRC_NEIME : 246- 253: vlcnl VllLfgLA mvskf DRRB_STRPE : 150- 156: alatt Vs-LglLL gfrad KPM1_ECOLI : 65- 72: disfp VflLngLI pffif KPM1_ECOLI : 120- 127: liyva VyiLlmLI vwmtg KPM1_ECOLI : 228- 234: yiseg Vs-LnyLA mftlv KPM2_ECOLI : 65- 72: disfp VflLngLI pffif KPM2_ECOLI : 120- 127: liyva VyiLlmLI vwmag KPM2_ECOLI : 228- 234: yiseg Vs-LnyLA mftlv NODJ_BRAJA : 30- 36: lawrk Va-LasLL gnlad NODJ_RHILT : 153- 160: lyalp ViaLtgLA faslg NODJ_RHILV : 40- 47: nladp ViyLfgLG aglgv VEXB_SALTI : 17- 24: mklit VceLiiLL msrdi YHHJ_ECOLI : 291- 297: qlgll Vi-LvlLP lqmls F 6: 13.9276 18( 12) L-x-[GILPV]-L-x(3,4)-L Occurences: 18(12) BEX1_HAEIN : 245- 252: lvvsd LaLLllg-L vmvkn BEX2_HAEIN : 245- 252: lvvsd LaLLlmg-L vmvkn BEX3_HAEIN : 245- 252: lvvsd LaLLllg-L vmvkn CTRC_NEIME : 245- 252: ivlcn LvLLlfg-L amvsk DRRB_STRPE : 60- 67: lidiv LmPLifl-L mftyl KPM1_ECOLI : 43- 50: epsah LlILlgi-L gyvmh KPM1_ECOLI : 175- 182: emqkv LpILlkp-L yfisc KPM2_ECOLI : 175- 182: emqkv LpILlkp-L yfisc NODJ_BRAJA : 46- 53: dpitn LfGLgfg-L glivg NODJ_BRAJA : 156- 164: iptia LtGLvfasL amvvi NODJ_RHILT : 46- 53: epliy LfGLgag-L gvmvg NODJ_RHILT : 156- 164: lpvia LtGLafasL gmvvt NODJ_RHILV : 43- 50: dpviy LfGLgag-L gvmvg VEXB_SALTI : 250- 257: satlf LaGLifh-L icdte YHHJ_ECOLI : 230- 238: iwsmg LvVLvvsgL slvlm YHHJ_ECOLI : 287- 295: rsmpq LgLLvilvL lplqm YHHJ_ECOLI : 290- 298: pqlgl LvILvllpL qmlsg YHHJ_ECOLI : 293- 301: gllvi LvLLplqmL sggst G 7: 13.9189 15( 12) L-A-x(2,3)-L-x(2)-[AGILV] Occurences: 15(12) BEX1_HAEIN : 245- 252: lvvsd LAll-LlgL vmvkn BEX1_HAEIN : 245- 253: lvvsd LAlllLglV mvknf BEX2_HAEIN : 245- 252: lvvsd LAll-LmgL vmvkn BEX3_HAEIN : 245- 252: lvvsd LAll-LlgL vmvkn BEX3_HAEIN : 245- 253: lvvsd LAlllLglV mvknf CTRC_NEIME : 114- 122: vldti LArmiLeiA gatia DRRB_STRPE : 131- 139: wqpat LAgslLgdV lryvv KPM1_ECOLI : 233- 241: vslny LAmftLvtL figla KPM2_ECOLI : 233- 241: vslny LAmftLvtL figla NODJ_BRAJA : 32- 39: wrkva LAsl-LgnL adpit NODJ_RHILT : 32- 39: wkkaa LAsl-LghL aepli NODJ_RHILT : 39- 46: sllgh LAep-LiyL fglga NODJ_RHILT : 159- 167: ialtg LAfasLgmV vtala NODJ_RHILV : 29- 36: wkkaa LAsi-LgnL adpvi NODJ_RHILV : 156- 164: iaitg LAfasLgmV vtala VEXB_SALTI : 44- 51: nymmv LAvp-LvwI sitvi YHHJ_ECOLI : 330- 338: thfvs LAqaiLyrG agfei H 8: 12.0102 20( 12) L-x(2)-L-x(1,2)-G Occurences: 20(12) BEX1_HAEIN : 245- 251: lvvsd LalLllG lvmvk BEX2_HAEIN : 245- 251: lvvsd LalLlmG lvmvk BEX3_HAEIN : 245- 251: lvvsd LalLllG lvmvk CTRC_NEIME : 245- 251: ivlcn LvlLlfG lamvs DRRB_STRPE : 152- 157: attvs LglLl-G fradg KPM1_ECOLI : 43- 48: epsah LliLl-G ilgyv KPM1_ECOLI : 150- 156: ltwsl LiiLscG vglif KPM1_ECOLI : 238- 244: lamft LvtLfiG lalyr KPM2_ECOLI : 43- 48: epsah LliLl-G ifgyi KPM2_ECOLI : 150- 156: ltwsl LiiLscG iglif KPM2_ECOLI : 238- 244: lamft LvtLfiG lalyr NODJ_BRAJA : 32- 37: wrkva LasLl-G nladp NODJ_BRAJA : 46- 52: dpitn LfgLgfG lgliv NODJ_RHILT : 32- 37: wkkaa LasLl-G hlaep NODJ_RHILT : 43- 48: hlaep LiyLf-G lgagl NODJ_RHILT : 46- 52: epliy LfgLgaG lgvmv NODJ_RHILV : 43- 49: dpviy LfgLgaG lgvmv VEXB_SALTI : 160- 166: mviaw LlgLsfG yfcda YHHJ_ECOLI : 15- 20: lgike LrsLl-G dkaml YHHJ_ECOLI : 298- 303: lvllp LqmLs-G gstpr YHHJ_ECOLI : 298- 304: lvllp LqmLsgG stpre I 9: 12.0102 19( 12) L-x(2,3)-L-x(2)-G Occurences: 19(12) BEX1_HAEIN : 245- 251: lvvsd Lal-LllG lvmvk BEX2_HAEIN : 245- 251: lvvsd Lal-LlmG lvmvk BEX3_HAEIN : 245- 251: lvvsd Lal-LllG lvmvk CTRC_NEIME : 245- 251: ivlcn Lvl-LlfG lamvs DRRB_STRPE : 18- 25: pvsgq LrtvLsaG erpar KPM1_ECOLI : 149- 156: vltws LliiLscG vglif KPM1_ECOLI : 150- 156: ltwsl Lii-LscG vglif KPM1_ECOLI : 238- 244: lamft Lvt-LfiG lalyr KPM2_ECOLI : 149- 156: vltws LliiLscG iglif KPM2_ECOLI : 150- 156: ltwsl Lii-LscG iglif KPM2_ECOLI : 238- 244: lamft Lvt-LfiG lalyr NODJ_BRAJA : 46- 52: dpitn Lfg-LgfG lgliv NODJ_BRAJA : 104- 111: twegi LftqLtlG divlg NODJ_RHILT : 46- 52: epliy Lfg-LgaG lgvmv NODJ_RHILT : 104- 111: tweam LytqLrlG divlg NODJ_RHILV : 43- 49: dpviy Lfg-LgaG lgvmv NODJ_RHILV : 101- 108: tweam LytqLtqG divvg VEXB_SALTI : 160- 166: mviaw Llg-LsfG yfcda YHHJ_ECOLI : 298- 304: lvllp Lqm-LsgG stpre J 10: 12.0102 16( 12) L-x(1,2)-L-x(2)-G Occurences: 16(12) BEX1_HAEIN : 245- 251: lvvsd LalLllG lvmvk BEX2_HAEIN : 245- 251: lvvsd LalLlmG lvmvk BEX3_HAEIN : 245- 251: lvvsd LalLllG lvmvk CTRC_NEIME : 245- 251: ivlcn LvlLlfG lamvs DRRB_STRPE : 152- 157: attvs Lg-LllG fradg KPM1_ECOLI : 150- 156: ltwsl LiiLscG vglif KPM1_ECOLI : 238- 244: lamft LvtLfiG lalyr KPM2_ECOLI : 150- 156: ltwsl LiiLscG iglif KPM2_ECOLI : 238- 244: lamft LvtLfiG lalyr NODJ_BRAJA : 46- 52: dpitn LfgLgfG lgliv NODJ_BRAJA : 53- 58: glgfg Lg-LivG rvegt NODJ_RHILT : 46- 52: epliy LfgLgaG lgvmv NODJ_RHILV : 43- 49: dpviy LfgLgaG lgvmv VEXB_SALTI : 160- 166: mviaw LlgLsfG yfcda VEXB_SALTI : 161- 166: viawl Lg-LsfG yfcda YHHJ_ECOLI : 298- 304: lvllp LqmLsgG stpre K 11: 12.0102 16( 12) A-x-F-x(4,5)-L Occurences: 16(12) BEX1_HAEIN : 158- 166: awflm AmFafglgL iicai BEX1_HAEIN : 195- 202: lpisg AfFfvhn-L paqaq BEX2_HAEIN : 158- 166: awflm AmFafalgL iicav BEX2_HAEIN : 195- 202: lpisg AfFfvhn-L psqaq BEX3_HAEIN : 158- 166: awflm AmFafalgL iicai BEX3_HAEIN : 195- 202: lpisg AfFfvhn-L paqaq CTRC_NEIME : 158- 166: awllm AfFaiglgL vicsi CTRC_NEIME : 195- 202: mplsg AfFfvhn-L ppkvq DRRB_STRPE : 250- 257: lmhgt AgFwdvg-L vlcvs KPM1_ECOLI : 234- 241: slnyl AmFtlvt-L figla KPM2_ECOLI : 234- 241: slnyl AmFtlvt-L figla NODJ_BRAJA : 254- 261: ffasi AlFrrrl-L r NODJ_RHILT : 195- 202: lflsg AvFpvdq-L pivfq NODJ_RHILV : 192- 199: lflsg AvFpvdq-L pvafq VEXB_SALTI : 195- 203: mflis AvFytaneL pysll YHHJ_ECOLI : 357- 364: maigg AfFtial-L rfrkt L 12: 12.0102 16( 12) L-x(4)-L-x(2,3)-V Occurences: 16(12) BEX1_HAEIN : 245- 253: lvvsd LalllLgl-V mvknf BEX1_HAEIN : 247- 255: vsdla LlllgLvm-V knfsk BEX2_HAEIN : 247- 255: vsdla LllmgLvm-V knfsk BEX3_HAEIN : 245- 253: lvvsd LalllLgl-V mvknf BEX3_HAEIN : 247- 255: vsdla LlllgLvm-V knfsk CTRC_NEIME : 247- 255: lcnlv LllfgLam-V skfsk DRRB_STRPE : 131- 139: wqpat LagslLgd-V lryvv DRRB_STRPE : 135- 143: tlags LlgdvLry-V valat DRRB_STRPE : 135- 144: tlags LlgdvLryvV alatt KPM1_ECOLI : 203- 211: qywsy LlwnpLvh-V velsr KPM1_ECOLI : 203- 212: qywsy LlwnpLvhvV elsre KPM2_ECOLI : 203- 211: qywsy LlwnpLvh-V velsr KPM2_ECOLI : 203- 212: qywsy LlwnpLvhvV elsre NODJ_BRAJA : 110- 119: ftqlt LgdivLgelV waask NODJ_BRAJA : 159- 167: ialtg LvfasLam-V visla NODJ_BRAJA : 159- 168: ialtg LvfasLamvV islap NODJ_RHILT : 159- 167: ialtg LafasLgm-V vtala NODJ_RHILT : 159- 168: ialtg LafasLgmvV talap NODJ_RHILV : 156- 164: iaitg LafasLgm-V vtala NODJ_RHILV : 156- 165: iaitg LafasLgmvV talap VEXB_SALTI : 187- 196: avpvm LrpmfLisaV fytan YHHJ_ECOLI : 233- 241: mglvv LvvsgLsl-V lmvkg M 13: 12.0102 27( 12) L-x(1,2)-L-L Occurences: 27(12) BEX1_HAEIN : 99- 102: sisan Ls-LL yhrnv BEX1_HAEIN : 245- 248: lvvsd La-LL llglv BEX1_HAEIN : 245- 249: lvvsd LalLL lglvm BEX1_HAEIN : 247- 250: vsdla Ll-LL glvmv BEX2_HAEIN : 99- 102: sisan Ls-LL yhrnv BEX2_HAEIN : 245- 248: lvvsd La-LL lmglv BEX2_HAEIN : 245- 249: lvvsd LalLL mglvm BEX3_HAEIN : 99- 102: sisan Ls-LL yhrnv BEX3_HAEIN : 245- 248: lvvsd La-LL llglv BEX3_HAEIN : 245- 249: lvvsd LalLL lglvm BEX3_HAEIN : 247- 250: vsdla Ll-LL glvmv CTRC_NEIME : 245- 248: ivlcn Lv-LL lfgla CTRC_NEIME : 245- 249: ivlcn LvlLL fglam DRRB_STRPE : 63- 67: ivlmp LifLL mftyl DRRB_STRPE : 152- 155: attvs Lg-LL lgfra DRRB_STRPE : 152- 156: attvs LglLL gfrad DRRB_STRPE : 206- 210: tsmiv LypLL fmsni KPM1_ECOLI : 43- 47: epsah LliLL gilgy KPM1_ECOLI : 44- 47: psahl Li-LL gilgy KPM1_ECOLI : 175- 179: emqkv LpiLL kplyf KPM2_ECOLI : 43- 47: epsah LliLL gifgy KPM2_ECOLI : 44- 47: psahl Li-LL gifgy KPM2_ECOLI : 175- 179: emqkv LpiLL kplyf NODJ_BRAJA : 32- 36: wrkva LasLL gnlad NODJ_RHILT : 32- 36: wkkaa LasLL ghlae NODJ_RHILT : 145- 148: gytqw Ls-LL yalpv NODJ_RHILV : 142- 145: gythw La-LL yalpv VEXB_SALTI : 20- 24: itvce LiiLL msrdi VEXB_SALTI : 80- 84: viagi LpyLL fryti YHHJ_ECOLI : 15- 19: lgike LrsLL gdkam YHHJ_ECOLI : 287- 290: rsmpq Lg-LL vilvl YHHJ_ECOLI : 293- 296: gllvi Lv-LL plqml N 14: 12.0102 12( 12) L-x(3,4)-G-L Occurences: 12(12) BEX1_HAEIN : 247- 252: vsdla Llll-GL vmvkn BEX2_HAEIN : 247- 252: vsdla Lllm-GL vmvkn BEX3_HAEIN : 247- 252: vsdla Llll-GL vmvkn CTRC_NEIME : 247- 252: lcnlv Lllf-GL amvsk DRRB_STRPE : 259- 265: dvglv LcvsaGL vavfa KPM1_ECOLI : 153- 159: sllii LscgvGL ifmvv KPM2_ECOLI : 153- 159: sllii LscgiGL ifmvv NODJ_BRAJA : 49- 55: tnlfg LgfglGL ivgrv NODJ_RHILT : 43- 49: hlaep LiylfGL gaglg NODJ_RHILV : 6- 11: mgvat Lpag-GL nwlav VEXB_SALTI : 248- 253: afsat Lfla-GL ifhli YHHJ_ECOLI : 233- 238: mglvv Lvvs-GL slvlm O 15: 12.0102 21( 12) L-x(3,4)-L-L Occurences: 21(12) BEX1_HAEIN : 42- 48: igffw LfvepLL mtffi BEX1_HAEIN : 185- 190: kiwgt Lsfv-LL pisga BEX1_HAEIN : 245- 250: lvvsd Lall-LL glvmv BEX2_HAEIN : 42- 48: igflw LfvepLL mtffi BEX2_HAEIN : 185- 190: kiwgt Lsfv-LL pisga BEX3_HAEIN : 42- 48: igffw LfvepLL mtffi BEX3_HAEIN : 185- 190: kiwgt Lsfv-LL pisga BEX3_HAEIN : 245- 250: lvvsd Lall-LL glvmv CTRC_NEIME : 42- 48: igflw LfvepLL mtfvi CTRC_NEIME : 151- 156: dmfym Lmaw-LL maffa CTRC_NEIME : 242- 248: pwyiv LcnlvLL lfgla DRRB_STRPE : 131- 136: wqpat Lags-LL gdvlr KPM1_ECOLI : 145- 150: flqlv Ltws-LL iilsc KPM2_ECOLI : 145- 150: flqlv Ltws-LL iilsc NODJ_BRAJA : 255- 261: fasia LfrrrLL r NODJ_RHILT : 251- 256: vipff Lsta-LL rrrll NODJ_RHILT : 255- 261: flsta LlrrrLL r NODJ_RHILT : 256- 261: lstal Lrrr-LL r NODJ_RHILV : 247- 253: ivvpf LvstaLL rrrlm VEXB_SALTI : 203- 208: ytane Lpys-LL sifsw YHHJ_ECOLI : 290- 296: pqlgl LvilvLL plqml P 16: 12.0102 23( 12) V-x(3,4)-L-x-L Occurences: 23(12) BEX1_HAEIN : 241- 247: sigfl Vvsd-LaL lllgl BEX1_HAEIN : 242- 249: igflv VsdlaLlL lglvm BEX2_HAEIN : 241- 247: sigfl Vvsd-LaL llmgl BEX2_HAEIN : 242- 249: igflv VsdlaLlL mglvm BEX3_HAEIN : 241- 247: sigfl Vvsd-LaL lllgl BEX3_HAEIN : 242- 249: igflv VsdlaLlL lglvm CTRC_NEIME : 241- 247: npwyi Vlcn-LvL llfgl DRRB_STRPE : 150- 156: alatt Vslg-LlL gfrad DRRB_STRPE : 167- 174: ggflg VvgamLvL ivfgf DRRB_STRPE : 168- 174: gflgv Vgam-LvL ivfgf KPM1_ECOLI : 11- 18: fevqk VtveaLfL reirt KPM1_ECOLI : 120- 126: liyva Vyil-LmL ivwmt KPM2_ECOLI : 11- 18: fevqk VtveaLfL reirt KPM2_ECOLI : 120- 126: liyva Vyil-LmL ivwma NODJ_BRAJA : 179- 186: tydyf VfyqsLvL tpmvf NODJ_RHILT : 185- 192: fyqtl VitpiLfL sgavf NODJ_RHILV : 182- 189: fyqtl VitpmLfL sgavf VEXB_SALTI : 156- 163: ifegm ViawlLgL sfgyf YHHJ_ECOLI : 42- 49: yssat VtpgsLnL apiai YHHJ_ECOLI : 234- 240: glvvl Vvsg-LsL vlmvk YHHJ_ECOLI : 235- 242: lvvlv VsglsLvL mvkgv YHHJ_ECOLI : 291- 298: qlgll VilvlLpL qmlsg YHHJ_ECOLI : 344- 351: agfei VwpqfLtL maigg Q 17: 12.0102 14( 12) L-x(4)-I-x(0,1)-V Occurences: 14(12) BEX1_HAEIN : 48- 54: fvepl LmtffI-V mmwkf BEX2_HAEIN : 48- 54: fvepl LmtffI-V mmwkf BEX3_HAEIN : 48- 54: fvepl LmtffI-V mmwkf CTRC_NEIME : 48- 54: fvepl LmtfvI-V lmwkf DRRB_STRPE : 210- 217: vlypl LfmsnIfV mpetm KPM1_ECOLI : 111- 118: iiara LletlIyV avyil KPM2_ECOLI : 111- 118: iiara LletlIyV avyil NODJ_BRAJA : 108- 114: ilftq LtlgdI-V lgelv NODJ_RHILT : 108- 114: mlytq LrlgdI-V lgema NODJ_RHILT : 127- 134: atkaa LagagIgV vaaal NODJ_RHILV : 105- 111: mlytq LtqgdI-V vgema NODJ_RHILV : 105- 112: mlytq LtqgdIvV gemaw VEXB_SALTI : 48- 55: vlavp LvwisItV isfqy VEXB_SALTI : 217- 223: swnpl LhaneI-V regmf YHHJ_ECOLI : 287- 294: rsmpq LgllvIlV llplq R 18: 12.0102 17( 12) I-x(4)-L-x(3,4)-L Occurences: 17(12) BEX1_HAEIN : 37- 47: ygrqn IgffwLfvepL lmtff BEX2_HAEIN : 37- 47: ygrkn IgflwLfvepL lmtff BEX3_HAEIN : 37- 47: ygrqn IgffwLfvepL lmtff CTRC_NEIME : 37- 47: ygrnn IgflwLfvepL lmtfv CTRC_NEIME : 240- 249: enpwy IvlcnLvll-L fglam DRRB_STRPE : 58- 67: vqlid IvlmpLifl-L mftyl KPM1_ECOLI : 106- 115: kpidt IiaraLlet-L iyvav KPM2_ECOLI : 106- 115: kpidt IiaraLlet-L iyvav NODJ_BRAJA : 154- 164: caipt IaltgLvfasL amvvi NODJ_RHILT : 44- 53: laepl IylfgLgag-L gvmvg NODJ_RHILT : 154- 164: yalpv IaltgLafasL gmvvt NODJ_RHILV : 41- 50: ladpv IylfgLgag-L gvmvg NODJ_RHILV : 151- 161: yalpv IaitgLafasL gmvvt NODJ_RHILV : 228- 238: mlgqp IanvcLhigvL ciyiv NODJ_RHILV : 242- 252: vlciy IvvpfLvstaL lrrrl VEXB_SALTI : 15- 24: yfmkl ItvceLiil-L msrdi YHHJ_ECOLI : 256- 265: piegs IplfmLgva-L slfat S 19: 12.0102 19( 12) A-x-L-x(0,1)-L Occurences: 19(12) BEX1_HAEIN : 97- 101: igsis AnLsL lyhrn BEX1_HAEIN : 246- 249: vvsdl AlL-L lglvm BEX1_HAEIN : 246- 250: vvsdl AlLlL glvmv BEX2_HAEIN : 97- 101: igsis AnLsL lyhrn BEX2_HAEIN : 133- 137: qilfm AvLvL igwid BEX2_HAEIN : 246- 249: vvsdl AlL-L mglvm BEX3_HAEIN : 97- 101: igsis AnLsL lyhrn BEX3_HAEIN : 246- 249: vvsdl AlL-L lglvm BEX3_HAEIN : 246- 250: vvsdl AlLlL glvmv CTRC_NEIME : 99- 102: sissn AsL-L yhrnv CTRC_NEIME : 153- 156: fymlm AwL-L maffa DRRB_STRPE : 170- 174: lgvvg AmLvL ivfgf KPM1_ECOLI : 41- 44: ileps AhL-L illgi KPM2_ECOLI : 41- 44: ileps AhL-L illgi NODJ_BRAJA : 33- 36: rkval AsL-L gnlad NODJ_BRAJA : 210- 213: sfqhf AgL-L plahs NODJ_RHILT : 33- 36: kkaal AsL-L ghlae NODJ_RHILV : 208- 212: fqqia AfLpL ahsid VEXB_SALTI : 158- 161: egmvi AwL-L glsfg VEXB_SALTI : 246- 250: plafs AtLfL aglif YHHJ_ECOLI : 23- 27: llgdk AmLtL ivfsf T 20: 12.0102 20( 12) A-x(1,2)-L-x-L Occurences: 20(12) BEX1_HAEIN : 97- 101: igsis An-LsL lyhrn BEX1_HAEIN : 161- 166: lmamf AfgLgL iicai BEX1_HAEIN : 246- 250: vvsdl Al-LlL glvmv BEX2_HAEIN : 97- 101: igsis An-LsL lyhrn BEX2_HAEIN : 133- 137: qilfm Av-LvL igwid BEX2_HAEIN : 161- 166: lmamf AfaLgL iicav BEX3_HAEIN : 97- 101: igsis An-LsL lyhrn BEX3_HAEIN : 161- 166: lmamf AfaLgL iicai BEX3_HAEIN : 246- 250: vvsdl Al-LlL glvmv CTRC_NEIME : 161- 166: lmaff AigLgL vicsi DRRB_STRPE : 170- 174: lgvvg Am-LvL ivfgf KPM1_ECOLI : 41- 46: ileps AhlLiL lgilg KPM2_ECOLI : 41- 46: ileps AhlLiL lgifg NODJ_BRAJA : 210- 215: sfqhf AglLpL ahsvd NODJ_RHILT : 210- 215: vfqta ArfLpL shsid NODJ_RHILV : 207- 212: afqqi AafLpL ahsid NODJ_RHILV : 208- 212: fqqia Af-LpL ahsid VEXB_SALTI : 158- 163: egmvi AwlLgL sfgyf VEXB_SALTI : 246- 250: plafs At-LfL aglif YHHJ_ECOLI : 23- 27: llgdk Am-LtL ivfsf Number of patterns evaluated by Pratt:3179 Total running time: 3 seconds