------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file 5_NUCLEOTIDASE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename 5_NUCLEOTIDASE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: 5NTD_BOVIN 574 5NTD_DISOM 577 5NTD_HAEIN 603 5NTD_HUMAN 574 5NTD_RAT 576 5NTD_VIBPA 560 CN16_ECOLI 647 CN16_HAEIN 657 CN16_SALTY 250 USHA_ECOLI 550 USHA_SALTY 550 Pratt run started at Thu Feb 6 18:25:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 11( 11) G-N-H-E-F 2: 19.8503 12( 11) V-L-x(2,4)-G-D-x(3)-G 3: 19.8503 12( 11) V-x(0,1)-L-x(2,3)-G-D-x(3)-G 4: 16.6802 11( 11) N-H-E-F 5: 16.1802 18( 11) L-x(3,4)-G-D-x(3)-G 6: 16.1802 20( 11) L-x(2,3)-G-D-x(3)-G 7: 15.1802 11( 11) E-F-x(0,1)-N-x(0,2)-G 8: 15.1802 12( 11) L-x(3)-E-x(0,2)-F-x(1,2)-G 9: 14.6802 14( 11) G-x(2,4)-L-x(4)-I-x(1,3)-V 10: 12.5102 11( 11) Y-x(3)-A-x(5)-F 11: 12.5102 11( 11) H-E-F 12: 12.5102 11( 11) Y-x(5)-G-N 13: 12.5102 13( 11) G-D-x(3)-G 14: 12.5102 13( 11) T-x-D-x-H 15: 12.0102 16( 11) P-x(2)-S-x(0,1)-A 16: 12.0102 17( 11) V-x(3)-A-x(2,3)-G 17: 12.0102 13( 11) V-x(3,4)-A-x(2)-G 18: 12.0102 15( 11) A-x(4)-V-x(3,4)-G 19: 12.0102 16( 11) A-x(4,5)-V-x(4)-G 20: 12.0102 15( 11) G-x(0,1)-D-x(2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.6013 11( 11) G-N-H-E-F-[DN]-x-[GP]-x-[DENT]-x-L B 2: 29.4312 11( 11) N-H-E-F-[DN]-x-[GP]-x-[DENT]-x-L C 3: 27.9226 11( 11) V-L-x(2,4)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] D 4: 27.9226 11( 11) V-x(0,1)-L-x(2,3)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] E 5: 26.8697 11( 11) Y-[ADENT]-x(2)-[ANPT]-[FILV]-G-N-x(2)-[FY]-[DNT]-x(3)-[DENT] F 6: 26.5036 11( 11) L-[GQ]-[DN]-x-E-x(0,2)-F-x(1,2)-G-x-[DENS]-x-[ILV] G 7: 25.2612 11( 11) H-E-F-[DN]-x-[GP]-x-[DENT]-x-L H 8: 24.2525 18( 11) L-x(3,4)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] I 9: 24.2525 18( 11) L-x(2,3)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] J 10: 20.5825 11( 11) G-D-x(2)-[QT]-G-[NSTV]-[ILP] K 11: 19.5405 11( 11) G-x(2,4)-L-x(4)-I-x(1,3)-V-[LPV]-x-[ADQS] L 12: 19.0164 12( 11) A-x(4,5)-V-x-[AGLV]-x-[NSTV]-G-x(4)-[GPT] M 13: 18.0573 11( 11) E-F-x(0,1)-N-x(0,2)-G-x(3)-[FLM] N 14: 16.7857 13( 11) T-[GNT]-D-x-H-x(4)-[DENQRS] O 15: 15.8735 11( 11) G-x(0,1)-D-x-[ADGV]-V-x(4)-[EGNQST] P 16: 15.7215 11( 11) Y-x(3)-A-x(4)-[EK]-F Q 17: 14.2494 13( 11) A-x(4)-V-x(3,4)-G-x(3)-[DGNS] R 18: 12.0102 16( 11) P-x(2)-S-x(0,1)-A S 19: 12.0102 17( 11) V-x(3)-A-x(2,3)-G T 20: 12.0102 13( 11) V-x(3,4)-A-x(2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.6013 11( 11) G-N-H-E-F-[DN]-x-[GP]-x-[DENT]-x-L Occurences: 11(11) 5NTD_BOVIN : 116- 127: esmal GNHEFDnGvEgL idpll 5NTD_DISOM : 117- 128: namal GNHEFDnGaEgL ldpfl 5NTD_HAEIN : 125- 136: hyftl GNHEFDaGnEgL lklle 5NTD_HUMAN : 116- 127: damal GNHEFDnGvEgL iepll 5NTD_RAT : 118- 129: damal GNHEFDnGvEgL idpll 5NTD_VIBPA : 119- 130: damal GNHEFDnPlDvL fkqqd CN16_ECOLI : 115- 126: tvgtl GNHEFNyGlDyL knala CN16_HAEIN : 125- 136: evgtl GNHEFNyGlNyL adaik CN16_SALTY : 114- 125: avgnl GNHEFNyGlDyL hnala USHA_ECOLI : 115- 126: damai GNHEFDnPlTvL rqqek USHA_SALTY : 115- 126: damav GNHEFDnPlTvL rqqek B 2: 29.4312 11( 11) N-H-E-F-[DN]-x-[GP]-x-[DENT]-x-L Occurences: 11(11) 5NTD_BOVIN : 117- 127: smalg NHEFDnGvEgL idpll 5NTD_DISOM : 118- 128: amalg NHEFDnGaEgL ldpfl 5NTD_HAEIN : 126- 136: yftlg NHEFDaGnEgL lklle 5NTD_HUMAN : 117- 127: amalg NHEFDnGvEgL iepll 5NTD_RAT : 119- 129: amalg NHEFDnGvEgL idpll 5NTD_VIBPA : 120- 130: amalg NHEFDnPlDvL fkqqd CN16_ECOLI : 116- 126: vgtlg NHEFNyGlDyL knala CN16_HAEIN : 126- 136: vgtlg NHEFNyGlNyL adaik CN16_SALTY : 115- 125: vgnlg NHEFNyGlDyL hnala USHA_ECOLI : 116- 126: amaig NHEFDnPlTvL rqqek USHA_SALTY : 116- 126: amavg NHEFDnPlTvL rqqek C 3: 27.9226 11( 11) V-L-x(2,4)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] Occurences: 11(11) 5NTD_BOVIN : 78- 91: raeph VLlldaGDqyQGTI wftvy 5NTD_DISOM : 79- 92: ardkn VLlldaGDqyQGTI wfnyy 5NTD_HAEIN : 89- 100: yknpl VLha--GDaiTGTL yftlf 5NTD_HUMAN : 78- 91: raepn VLlldaGDqyQGTI wftvy 5NTD_RAT : 80- 93: keepn VLlldaGDqyQGTI wftvy 5NTD_VIBPA : 81- 94: aeggs VLllsgGDinTGVP esdlq CN16_ECOLI : 70- 82: evkns VLvdn-GDliQGSP ladym CN16_HAEIN : 80- 92: evkns VLvdn-GDliQGNP iadyq CN16_SALTY : 70- 82: evkns VLvdn-GDliQGSP lrlyg USHA_ECOLI : 77- 90: aeggs VLllsgGDinTGVP esdlq USHA_SALTY : 77- 90: qeggs VLllsgGDinTGVP esdlq D 4: 27.9226 11( 11) V-x(0,1)-L-x(2,3)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] Occurences: 11(11) 5NTD_BOVIN : 78- 91: raeph VlLldaGDqyQGTI wftvy 5NTD_DISOM : 79- 92: ardkn VlLldaGDqyQGTI wfnyy 5NTD_HAEIN : 89- 100: yknpl V-Lha-GDaiTGTL yftlf 5NTD_HUMAN : 78- 91: raepn VlLldaGDqyQGTI wftvy 5NTD_RAT : 80- 93: keepn VlLldaGDqyQGTI wftvy 5NTD_VIBPA : 81- 94: aeggs VlLlsgGDinTGVP esdlq CN16_ECOLI : 70- 82: evkns V-LvdnGDliQGSP ladym CN16_HAEIN : 80- 92: evkns V-LvdnGDliQGNP iadyq CN16_SALTY : 70- 82: evkns V-LvdnGDliQGSP lrlyg USHA_ECOLI : 77- 90: aeggs VlLlsgGDinTGVP esdlq USHA_SALTY : 77- 90: qeggs VlLlsgGDinTGVP esdlq E 5: 26.8697 11( 11) Y-[ADENT]-x(2)-[ANPT]-[FILV]-G-N-x(2)-[FY]-[DNT]-x(3)-[DENT] Occurences: 11(11) 5NTD_BOVIN : 110- 125: mnalg YEsmALGNheFDngvE glidp 5NTD_DISOM : 111- 126: ieavg YNamALGNheFDngaE glldp 5NTD_HAEIN : 451- 466: tfnda YTflPFGNtlYTykmE gslvk 5NTD_HUMAN : 110- 125: mnalr YDamALGNheFDngvE gliep 5NTD_RAT : 112- 127: mnllg YDamALGNheFDngvE glidp 5NTD_VIBPA : 113- 128: mskig YDamALGNheFDnplD vlfkq CN16_ECOLI : 109- 124: lntld YTvgTLGNheFNyglD ylkna CN16_HAEIN : 119- 134: lnamn YEvgTLGNheFNyglN ylada CN16_SALTY : 108- 123: lntld YAvgNLGNheFNyglD ylhna USHA_ECOLI : 109- 124: mnlvg YDamAIGNheFDnplT vlrqq USHA_SALTY : 109- 124: mnlig YDamAVGNheFDnplT vlrqq F 6: 26.5036 11( 11) L-[GQ]-[DN]-x-E-x(0,2)-F-x(1,2)-G-x-[DENS]-x-[ILV] Occurences: 11(11) 5NTD_BOVIN : 115- 127: yesma LGNhE--FdnGvEgL idpll 5NTD_DISOM : 116- 128: ynama LGNhE--FdnGaEgL ldpfl 5NTD_HAEIN : 124- 136: fhyft LGNhE--FdaGnEgL lklle 5NTD_HUMAN : 115- 127: ydama LGNhE--FdnGvEgL iepll 5NTD_RAT : 117- 129: ydama LGNhE--FdnGvEgL idpll 5NTD_VIBPA : 98- 111: vpesd LQDaEpdFk-GmSkI gydam CN16_ECOLI : 114- 126: ytvgt LGNhE--FnyGlDyL knala CN16_HAEIN : 124- 136: yevgt LGNhE--FnyGlNyL adaik CN16_SALTY : 113- 125: yavgn LGNhE--FnyGlDyL hnala USHA_ECOLI : 94- 107: vpesd LQDaEpdFr-GmNlV gydam USHA_SALTY : 94- 107: vpesd LQDaEpdFr-GmNlI gydam G 7: 25.2612 11( 11) H-E-F-[DN]-x-[GP]-x-[DENT]-x-L Occurences: 11(11) 5NTD_BOVIN : 118- 127: malgn HEFDnGvEgL idpll 5NTD_DISOM : 119- 128: malgn HEFDnGaEgL ldpfl 5NTD_HAEIN : 127- 136: ftlgn HEFDaGnEgL lklle 5NTD_HUMAN : 118- 127: malgn HEFDnGvEgL iepll 5NTD_RAT : 120- 129: malgn HEFDnGvEgL idpll 5NTD_VIBPA : 121- 130: malgn HEFDnPlDvL fkqqd CN16_ECOLI : 117- 126: gtlgn HEFNyGlDyL knala CN16_HAEIN : 127- 136: gtlgn HEFNyGlNyL adaik CN16_SALTY : 116- 125: gnlgn HEFNyGlDyL hnala USHA_ECOLI : 117- 126: maign HEFDnPlTvL rqqek USHA_SALTY : 117- 126: mavgn HEFDnPlTvL rqqek H 8: 24.2525 18( 11) L-x(3,4)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] Occurences: 18(11) 5NTD_BOVIN : 79- 91: aephv LlldaGDqyQGTI wftvy 5NTD_BOVIN : 80- 91: ephvl Llda-GDqyQGTI wftvy 5NTD_DISOM : 80- 92: rdknv LlldaGDqyQGTI wfnyy 5NTD_DISOM : 81- 92: dknvl Llda-GDqyQGTI wfnyy 5NTD_HAEIN : 88- 100: kyknp LvlhaGDaiTGTL yftlf 5NTD_HUMAN : 79- 91: aepnv LlldaGDqyQGTI wftvy 5NTD_HUMAN : 80- 91: epnvl Llda-GDqyQGTI wftvy 5NTD_RAT : 81- 93: eepnv LlldaGDqyQGTI wftvy 5NTD_RAT : 82- 93: epnvl Llda-GDqyQGTI wftvy 5NTD_VIBPA : 82- 94: eggsv LllsgGDinTGVP esdlq 5NTD_VIBPA : 83- 94: ggsvl Llsg-GDinTGVP esdlq CN16_ECOLI : 71- 82: vknsv Lvdn-GDliQGSP ladym CN16_HAEIN : 81- 92: vknsv Lvdn-GDliQGNP iadyq CN16_SALTY : 71- 82: vknsv Lvdn-GDliQGSP lrlyg USHA_ECOLI : 78- 90: eggsv LllsgGDinTGVP esdlq USHA_ECOLI : 79- 90: ggsvl Llsg-GDinTGVP esdlq USHA_SALTY : 78- 90: eggsv LllsgGDinTGVP esdlq USHA_SALTY : 79- 90: ggsvl Llsg-GDinTGVP esdlq I 9: 24.2525 18( 11) L-x(2,3)-G-D-x(2)-[QT]-G-[NSTV]-[ILP] Occurences: 18(11) 5NTD_BOVIN : 80- 91: ephvl LldaGDqyQGTI wftvy 5NTD_BOVIN : 81- 91: phvll Lda-GDqyQGTI wftvy 5NTD_DISOM : 81- 92: dknvl LldaGDqyQGTI wfnyy 5NTD_DISOM : 82- 92: knvll Lda-GDqyQGTI wfnyy 5NTD_HAEIN : 90- 100: knplv Lha-GDaiTGTL yftlf 5NTD_HUMAN : 80- 91: epnvl LldaGDqyQGTI wftvy 5NTD_HUMAN : 81- 91: pnvll Lda-GDqyQGTI wftvy 5NTD_RAT : 82- 93: epnvl LldaGDqyQGTI wftvy 5NTD_RAT : 83- 93: pnvll Lda-GDqyQGTI wftvy 5NTD_VIBPA : 83- 94: ggsvl LlsgGDinTGVP esdlq 5NTD_VIBPA : 84- 94: gsvll Lsg-GDinTGVP esdlq CN16_ECOLI : 71- 82: vknsv LvdnGDliQGSP ladym CN16_HAEIN : 81- 92: vknsv LvdnGDliQGNP iadyq CN16_SALTY : 71- 82: vknsv LvdnGDliQGSP lrlyg USHA_ECOLI : 79- 90: ggsvl LlsgGDinTGVP esdlq USHA_ECOLI : 80- 90: gsvll Lsg-GDinTGVP esdlq USHA_SALTY : 79- 90: ggsvl LlsgGDinTGVP esdlq USHA_SALTY : 80- 90: gsvll Lsg-GDinTGVP esdlq J 10: 20.5825 11( 11) G-D-x(2)-[QT]-G-[NSTV]-[ILP] Occurences: 11(11) 5NTD_BOVIN : 84- 91: lllda GDqyQGTI wftvy 5NTD_DISOM : 85- 92: lllda GDqyQGTI wfnyy 5NTD_HAEIN : 93- 100: lvlha GDaiTGTL yftlf 5NTD_HUMAN : 84- 91: lllda GDqyQGTI wftvy 5NTD_RAT : 86- 93: lllda GDqyQGTI wftvy 5NTD_VIBPA : 87- 94: lllsg GDinTGVP esdlq CN16_ECOLI : 75- 82: vlvdn GDliQGSP ladym CN16_HAEIN : 85- 92: vlvdn GDliQGNP iadyq CN16_SALTY : 75- 82: vlvdn GDliQGSP lrlyg USHA_ECOLI : 83- 90: lllsg GDinTGVP esdlq USHA_SALTY : 83- 90: lllsg GDinTGVP esdlq K 11: 19.5405 11( 11) G-x(2,4)-L-x(4)-I-x(1,3)-V-[LPV]-x-[ADQS] Occurences: 11(11) 5NTD_BOVIN : 447- 460: ygqrt Gef--LqvggIh--VVyD isrnp 5NTD_DISOM : 305- 322: vikre GnpilLnssiIqdpVLlA evnkw 5NTD_HAEIN : 135- 150: dagne GllklLeplkIp--VLsA nvipd 5NTD_HUMAN : 447- 460: ygqst Gef--LqvggIh--VVyD lsrkp 5NTD_RAT : 449- 462: ygqst Gef--LqvggIh--VVyD isrkp 5NTD_VIBPA : 79- 96: iqaeg GsvllLsggdIntgVPeS dlqda CN16_ECOLI : 167- 183: vvdkd GkkqtLkigyIgv-VPpQ imgwd CN16_HAEIN : 177- 193: vvdnq GkthkLkigyIgf-VPpQ imvwd CN16_SALTY : 166- 182: vidkd GnpqtLkngyIgf-VPpQ imiwd USHA_ECOLI : 75- 92: vaaeg GsvllLsggdIntgVPeS dlqda USHA_SALTY : 75- 92: vaqeg GsvllLsggdIntgVPeS dlqda L 12: 19.0164 12( 11) A-x(4,5)-V-x-[AGLV]-x-[NSTV]-G-x(4)-[GPT] Occurences: 12(11) 5NTD_BOVIN : 230- 246: vdkli AqkvkgVdVvVGghsnT flytg 5NTD_DISOM : 231- 247: tdkli AqkvrgVdVvVGghsnT flytg 5NTD_HAEIN : 477- 493: qvled AmqfalVdGsTGafpyG agiry 5NTD_HUMAN : 230- 246: mdkli AqkvrgVdVvVGghsnT flytg 5NTD_RAT : 232- 248: mdkli AqkvrgVdVvVGghtnT flytg 5NTD_VIBPA : 76- 91: rdeiq Aeggs-VlLlSGgdinT gvpes CN16_ECOLI : 217- 232: mrekg Advvv-VlAhSGlsadP ykvma CN16_HAEIN : 74- 90: irqar AevknsVlVdNGdliqG npiad CN16_SALTY : 216- 231: mrekg Adivv-ViAhSGlsadP yhsma USHA_ECOLI : 71- 87: irkev AaeggsVlLlSGgdinT gvpes USHA_ECOLI : 72- 87: rkeva Aeggs-VlLlSGgdinT gvpes USHA_SALTY : 71- 87: irkev AqeggsVlLlSGgdinT gvpes M 13: 18.0573 11( 11) E-F-x(0,1)-N-x(0,2)-G-x(3)-[FLM] Occurences: 11(11) 5NTD_BOVIN : 119- 127: algnh EFdN--GvegL idpll 5NTD_DISOM : 120- 128: algnh EFdN--GaegL ldpfl 5NTD_HAEIN : 274- 284: yeypl EFkNpnGdpvF vmegw 5NTD_HUMAN : 119- 127: algnh EFdN--GvegL iepll 5NTD_RAT : 121- 129: algnh EFdN--GvegL idpll 5NTD_VIBPA : 305- 313: grady EFrN--GelsM vsydl CN16_ECOLI : 118- 126: tlgnh EF-Ny-GldyL knala CN16_HAEIN : 128- 136: tlgnh EF-Ny-GlnyL adaik CN16_SALTY : 117- 125: nlgnh EF-Ny-GldyL hnala USHA_ECOLI : 301- 309: gradf EFrN--GemkM vnyql USHA_SALTY : 301- 309: gradf EFrN--GemkM vnyql N 14: 16.7857 13( 11) T-[GNT]-D-x-H-x(4)-[DENQRS] Occurences: 13(11) 5NTD_BOVIN : 34- 43: ltilh TNDvHsrleQ tseds 5NTD_DISOM : 37- 46: ltilh TNDvHarveE tnqds 5NTD_HAEIN : 248- 257: idviv TGDsHylygN delrs 5NTD_HUMAN : 34- 43: ltilh TNDvHsrleQ tseds 5NTD_RAT : 36- 45: ltimh TNDvHsrleQ tsdds 5NTD_VIBPA : 43- 52: ltvlh TNDhHgrfwQ nkhge CN16_ECOLI : 29- 38: lrime TTDlHsnmmD fdyyk CN16_ECOLI : 554- 563: gkfag TGDsHiafaS pdenr CN16_HAEIN : 39- 48: lriva TTDvHsfltD fdyyk CN16_HAEIN : 564- 573: nkfpg TGDkHivyaS pdesr CN16_SALTY : 29- 38: lrime TTDlHsnmmD fdyyk USHA_ECOLI : 39- 48: itvlh TNDhHghfwR neyge USHA_SALTY : 39- 48: itilh TNDhHghfwR seyge O 15: 15.8735 11( 11) G-x(0,1)-D-x-[ADGV]-V-x(4)-[EGNQST] Occurences: 11(11) 5NTD_BOVIN : 235- 245: aqkvk GvDvVVgghsN tflyt 5NTD_DISOM : 236- 246: aqkvr GvDvVVgghsN tflyt 5NTD_HAEIN : 296- 305: ysavv G-DlGVkfspE giasi 5NTD_HUMAN : 235- 245: aqkvr GvDvVVgghsN tflyt 5NTD_RAT : 237- 247: aqkvr GvDvVVgghtN tflyt 5NTD_VIBPA : 376- 385: ngkle G-DrDVvrfqQ tnlgr CN16_ECOLI : 216- 226: emrek GaDvVVvlahS glsad CN16_HAEIN : 226- 236: emkkk GaDiVValahT gpsde CN16_SALTY : 215- 225: emrek GaDiVVviahS glsad USHA_ECOLI : 398- 408: qmdrt GaDfAVmsggG irdsi USHA_SALTY : 398- 408: qiagt GaDfGVmsggG irdsi P 16: 15.7215 11( 11) Y-x(3)-A-x(4)-[EK]-F Occurences: 11(11) 5NTD_BOVIN : 110- 120: mnalg YesmAlgnhEF dngve 5NTD_DISOM : 111- 121: ieavg YnamAlgnhEF dngae 5NTD_HAEIN : 566- 576: egvdt YlpdAesfiKF mkkhp 5NTD_HUMAN : 110- 120: mnalr YdamAlgnhEF dngve 5NTD_RAT : 112- 122: mnllg YdamAlgnhEF dngve 5NTD_VIBPA : 113- 123: mskig YdamAlgnhEF dnpld CN16_ECOLI : 125- 135: nygld YlknAlagaKF pyvna CN16_HAEIN : 135- 145: nygln YladAikqaKF pivns CN16_SALTY : 124- 134: nygld YlhnAlaggKF pyvna USHA_ECOLI : 109- 119: mnlvg YdamAignhEF dnplt USHA_SALTY : 109- 119: mnlig YdamAvgnhEF dnplt Q 17: 14.2494 13( 11) A-x(4)-V-x(3,4)-G-x(3)-[DGNS] Occurences: 13(11) 5NTD_BOVIN : 434- 447: stlkk AfddtVhry-GqrtG eflqv 5NTD_DISOM : 434- 447: stlra AfdhsVrry-GqntG eflqv 5NTD_HAEIN : 290- 303: vmegw AysavVgdl-GvkfS pegia 5NTD_HUMAN : 434- 447: stlkk AfehsVhry-GqstG eflqv 5NTD_RAT : 436- 449: stlkk AfehsVhry-GqstG eflqv 5NTD_VIBPA : 76- 90: rdeiq AeggsVlllsGgdiN tgvpe CN16_ECOLI : 217- 231: mrekg AdvvvVlahsGlsaD pykvm CN16_ECOLI : 347- 361: kadhd AtrqfVskpiGksaD nmysy CN16_HAEIN : 357- 371: kpvhe AtrkyVsqpiGkatD nmysy CN16_SALTY : 216- 230: mrekg AdivvViahsGlsaD pyhsm USHA_ECOLI : 72- 86: rkeva AeggsVlllsGgdiN tgvpe USHA_ECOLI : 464- 477: aypqf AnvsfVakd-GklnD lkikg USHA_SALTY : 464- 477: aypql AnvsfVake-GkltD lkikg R 18: 12.0102 16( 11) P-x(2)-S-x(0,1)-A Occurences: 16(11) 5NTD_BOVIN : 138- 142: kevnf PilS-A nikak 5NTD_DISOM : 5- 9: mprv PsaS-A tgssa 5NTD_DISOM : 139- 143: lnvsf PvlS-A nleqg 5NTD_HAEIN : 146- 150: eplki PvlS-A nvipd 5NTD_HAEIN : 391- 395: tgsam PggS-A nripn 5NTD_HAEIN : 406- 411: kagsn PegSiA trfia 5NTD_HUMAN : 138- 142: keakf PilS-A nikak 5NTD_RAT : 140- 144: rnvkf PilS-A nikar 5NTD_VIBPA : 140- 144: dwanf PmlS-A niydk 5NTD_VIBPA : 457- 462: ivatk PvdSgA yaqfa CN16_ECOLI : 401- 405: dlakl PvlS-A aapfk CN16_ECOLI : 401- 406: dlakl PvlSaA apfkv CN16_HAEIN : 411- 415: amagl PilS-A gapfk CN16_SALTY : 231- 236: glsad PyhSmA ensvy USHA_ECOLI : 136- 140: kwakf PllS-A niyqk USHA_ECOLI : 241- 246: maral PagSlA mivgg USHA_SALTY : 241- 246: marsl PagSlA mivgg S 19: 12.0102 17( 11) V-x(3)-A-x(2,3)-G Occurences: 17(11) 5NTD_BOVIN : 537- 544: iskmk VlypAve-G riqfs 5NTD_DISOM : 109- 117: hfiea VgynAmalG nhefd 5NTD_DISOM : 537- 544: ikqmk VvypAve-G rilfv 5NTD_HAEIN : 535- 543: nkryl VgtnAyvaG gkdgy 5NTD_HUMAN : 537- 544: iskmk ViypAve-G rikfs 5NTD_RAT : 539- 546: iskmk ViypAve-G rikfs 5NTD_VIBPA : 541- 548: hspid VneyAps-G evmyq CN16_ECOLI : 220- 227: kgadv VvvlAhs-G lsadp CN16_ECOLI : 501- 509: nyqid VtqpArydG ecqmi CN16_HAEIN : 196- 204: ppqim VwdkAnlqG kvetr CN16_HAEIN : 230- 237: kgadi VvalAht-G psdep CN16_SALTY : 219- 226: kgadi VvviAhs-G lsadp USHA_ECOLI : 107- 115: rgmnl VgydAmaiG nhefd USHA_ECOLI : 432- 440: qpfgn VvvyAdmtG kevid USHA_ECOLI : 466- 473: pqfan VsfvAkd-G klndl USHA_SALTY : 388- 396: tnmgr VilaAqiaG tgadf USHA_SALTY : 466- 473: pqlan VsfvAke-G kltdl T 20: 12.0102 13( 11) V-x(3,4)-A-x(2)-G Occurences: 13(11) 5NTD_BOVIN : 537- 544: iskmk Vlyp-AveG riqfs 5NTD_DISOM : 537- 544: ikqmk Vvyp-AveG rilfv 5NTD_HAEIN : 384- 392: qeivg VitgsAmpG gsanr 5NTD_HUMAN : 537- 544: iskmk Viyp-AveG rikfs 5NTD_RAT : 539- 546: iskmk Viyp-AveG rikfs 5NTD_VIBPA : 498- 506: ryrft VpsynAsgG dgypk 5NTD_VIBPA : 541- 548: hspid Vney-ApsG evmyq CN16_ECOLI : 219- 227: ekgad VvvvlAhsG lsadp CN16_ECOLI : 220- 227: kgadv Vvvl-AhsG lsadp CN16_HAEIN : 230- 237: kgadi Vval-AhtG psdep CN16_SALTY : 219- 226: kgadi Vvvi-AhsG lsadp USHA_ECOLI : 466- 473: pqfan Vsfv-AkdG klndl USHA_SALTY : 466- 473: pqlan Vsfv-AkeG kltdl Number of patterns evaluated by Pratt:8451 Total running time: 11 seconds