------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file 4_DISULFIDE_CORE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename 4_DISULFIDE_CORE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALK1_HUMAN 132 ALK1_PIG 115 CALU_CAVPO 55 ELAF_HUMAN 117 IBP_TURRS 110 KALM_CHICK 676 KALM_HUMAN 680 SPAI_PIG 61 WAP_CAMDR 117 WAP_MOUSE 134 WAP_RABIT 127 WAP_RAT 137 WDNM_RAT 60 Pratt run started at Thu Feb 6 18:25:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 14( 13) C-x(2)-D-x(2)-C-x(4)-K-C-C-x(3)-C 2: 25.0203 14( 13) D-x(2)-C-x(4)-K-C-C-x(3)-C 3: 24.0203 20( 13) D-x(0,2)-C-x(4)-K-C-C-x(3)-C 4: 20.8503 14( 13) C-x(4)-K-C-C-x(3)-C 5: 16.6802 14( 13) K-C-C-x(3)-C 6: 12.5102 17( 13) C-C-x(3)-C 7: 12.5102 17( 13) G-x-C-P 8: 11.5102 23( 13) C-x(0,1)-G-x(2,3)-C 9: 11.5102 17( 13) K-x(3)-C-x(0,2)-P 10: 11.0102 20( 13) G-x(0,2)-K-x(0,1)-C 11: 11.0102 19( 13) G-x(1,3)-C-x(3,4)-C 12: 11.0102 22( 13) C-x(1,2)-G-x(1,3)-C 13: 11.0102 27( 13) C-x(0,1)-G-x(1,3)-C 14: 10.5102 23( 13) K-x(1,3)-C-x(0,2)-P 15: 10.5102 28( 13) C-x(0,2)-S-x(3,5)-C 16: 8.3401 24( 13) C-x(2)-P 17: 8.3401 30( 13) K-x-C 18: 8.3401 29( 13) G-x-C 19: 8.3401 33( 13) C-P 20: 8.3401 19( 13) C-x-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 35.5410 14( 13) C-x(2)-D-x-[DEQS]-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] B 2: 31.3710 14( 13) D-x-[DEQS]-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] C 3: 28.1658 20( 13) D-x(0,2)-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] D 4: 24.9958 14( 13) C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] E 5: 20.8257 14( 13) K-C-C-x-[DGNSV]-x-C-[AGIV] F 6: 17.5834 15( 13) C-C-x-[DGNSV]-x-C-[AG] G 7: 13.7542 16( 13) K-x-[DGQT]-x-C-x(0,2)-P H 8: 13.7084 22( 13) C-x(1,2)-G-x(1,3)-C-[CGP] I 9: 12.9195 18( 13) G-x(0,2)-K-x(0,1)-C-x(2)-[DGNPS] J 10: 12.5102 17( 13) G-x-C-P K 11: 12.4365 18( 13) C-x(0,1)-G-x(1,3)-C-x(3)-[ACDGSTV] L 12: 11.5102 23( 13) C-x(0,1)-G-x(2,3)-C M 13: 11.0340 16( 13) C-P-x(4)-[ACP] N 14: 11.0102 19( 13) G-x(1,3)-C-x(3,4)-C O 15: 10.5102 23( 13) K-x(1,3)-C-x(0,2)-P P 16: 10.5102 28( 13) C-x(0,2)-S-x(3,5)-C Q 17: 8.3401 24( 13) C-x(2)-P R 18: 8.3401 30( 13) K-x-C S 19: 8.3401 29( 13) G-x-C T 20: 8.3401 19( 13) C-x-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 35.5410 14( 13) C-x(2)-D-x-[DEQS]-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] Occurences: 14(13) ALK1_HUMAN : 105- 123: nppnf CemDgQCkrdlKCCmGmCG kscvs ALK1_PIG : 34- 52: yekpk CtsDwQCpdkkKCCrDtCA ikcln ALK1_PIG : 88- 106: nppnh CktDsQClgdlKCCkSmCG kvclt CALU_CAVPO : 30- 48: hppnk CtsDyDCpkpqKCCpGyCG kqcyq ELAF_HUMAN : 92- 110: nppnr ClkDtDCpgikKCCeGsCG macfv IBP_TURRS : 80- 98: iclhg CdsDsDCkegqKCCfDgCG yiclt KALM_CHICK : 146- 164: acves CeaDsECsgvkKCCsNgCG htcqv KALM_HUMAN : 151- 169: acves CevDnECsgvkKCCsNgCG htcqv SPAI_PIG : 36- 54: npsnk CwrDyDCpgvkKCCeGfCG kdcly WAP_CAMDR : 86- 104: leknd CsrDdQCegnkKCCfSsCA mrcld WAP_MOUSE : 103- 121: pmkie CssDrECsgnmKCCnVdCV mtctp WAP_RABIT : 96- 114: eelsd CanDiECrgdkKCCfSrCA mryle WAP_RAT : 102- 120: pkdnp CsiDsDCsgtmKCCkNgCI mscmd WDNM_RAT : 34- 52: tcvel CsgDqSCpniqKCCsNgCG hvcks B 2: 31.3710 14( 13) D-x-[DEQS]-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] Occurences: 14(13) ALK1_HUMAN : 108- 123: nfcem DgQCkrdlKCCmGmCG kscvs ALK1_PIG : 37- 52: pkcts DwQCpdkkKCCrDtCA ikcln ALK1_PIG : 91- 106: nhckt DsQClgdlKCCkSmCG kvclt CALU_CAVPO : 33- 48: nkcts DyDCpkpqKCCpGyCG kqcyq ELAF_HUMAN : 95- 110: nrclk DtDCpgikKCCeGsCG macfv IBP_TURRS : 83- 98: hgcds DsDCkegqKCCfDgCG yiclt KALM_CHICK : 149- 164: escea DsECsgvkKCCsNgCG htcqv KALM_HUMAN : 154- 169: escev DnECsgvkKCCsNgCG htcqv SPAI_PIG : 39- 54: nkcwr DyDCpgvkKCCeGfCG kdcly WAP_CAMDR : 89- 104: ndcsr DdQCegnkKCCfSsCA mrcld WAP_MOUSE : 106- 121: iecss DrECsgnmKCCnVdCV mtctp WAP_RABIT : 99- 114: sdcan DiECrgdkKCCfSrCA mryle WAP_RAT : 105- 120: npcsi DsDCsgtmKCCkNgCI mscmd WDNM_RAT : 37- 52: elcsg DqSCpniqKCCsNgCG hvcks C 3: 28.1658 20( 13) D-x(0,2)-C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] Occurences: 20(13) ALK1_HUMAN : 108- 123: nfcem DgqCkrdlKCCmGmCG kscvs ALK1_PIG : 37- 52: pkcts DwqCpdkkKCCrDtCA ikcln ALK1_PIG : 91- 106: nhckt DsqClgdlKCCkSmCG kvclt CALU_CAVPO : 33- 48: nkcts DydCpkpqKCCpGyCG kqcyq CALU_CAVPO : 35- 48: ctsdy D--CpkpqKCCpGyCG kqcyq ELAF_HUMAN : 95- 110: nrclk DtdCpgikKCCeGsCG macfv ELAF_HUMAN : 97- 110: clkdt D--CpgikKCCeGsCG macfv IBP_TURRS : 83- 98: hgcds DsdCkegqKCCfDgCG yiclt IBP_TURRS : 85- 98: cdsds D--CkegqKCCfDgCG yiclt KALM_CHICK : 149- 164: escea DseCsgvkKCCsNgCG htcqv KALM_HUMAN : 154- 169: escev DneCsgvkKCCsNgCG htcqv SPAI_PIG : 39- 54: nkcwr DydCpgvkKCCeGfCG kdcly SPAI_PIG : 41- 54: cwrdy D--CpgvkKCCeGfCG kdcly WAP_CAMDR : 89- 104: ndcsr DdqCegnkKCCfSsCA mrcld WAP_CAMDR : 90- 104: dcsrd Dq-CegnkKCCfSsCA mrcld WAP_MOUSE : 106- 121: iecss DreCsgnmKCCnVdCV mtctp WAP_RABIT : 99- 114: sdcan DieCrgdkKCCfSrCA mryle WAP_RAT : 105- 120: npcsi DsdCsgtmKCCkNgCI mscmd WAP_RAT : 107- 120: csids D--CsgtmKCCkNgCI mscmd WDNM_RAT : 37- 52: elcsg DqsCpniqKCCsNgCG hvcks D 4: 24.9958 14( 13) C-x(4)-K-C-C-x-[DGNSV]-x-C-[AGIV] Occurences: 14(13) ALK1_HUMAN : 111- 123: emdgq CkrdlKCCmGmCG kscvs ALK1_PIG : 40- 52: tsdwq CpdkkKCCrDtCA ikcln ALK1_PIG : 94- 106: ktdsq ClgdlKCCkSmCG kvclt CALU_CAVPO : 36- 48: tsdyd CpkpqKCCpGyCG kqcyq ELAF_HUMAN : 98- 110: lkdtd CpgikKCCeGsCG macfv IBP_TURRS : 86- 98: dsdsd CkegqKCCfDgCG yiclt KALM_CHICK : 152- 164: eadse CsgvkKCCsNgCG htcqv KALM_HUMAN : 157- 169: evdne CsgvkKCCsNgCG htcqv SPAI_PIG : 42- 54: wrdyd CpgvkKCCeGfCG kdcly WAP_CAMDR : 92- 104: srddq CegnkKCCfSsCA mrcld WAP_MOUSE : 109- 121: ssdre CsgnmKCCnVdCV mtctp WAP_RABIT : 102- 114: andie CrgdkKCCfSrCA mryle WAP_RAT : 108- 120: sidsd CsgtmKCCkNgCI mscmd WDNM_RAT : 40- 52: sgdqs CpniqKCCsNgCG hvcks E 5: 20.8257 14( 13) K-C-C-x-[DGNSV]-x-C-[AGIV] Occurences: 14(13) ALK1_HUMAN : 116- 123: ckrdl KCCmGmCG kscvs ALK1_PIG : 45- 52: cpdkk KCCrDtCA ikcln ALK1_PIG : 99- 106: clgdl KCCkSmCG kvclt CALU_CAVPO : 41- 48: cpkpq KCCpGyCG kqcyq ELAF_HUMAN : 103- 110: cpgik KCCeGsCG macfv IBP_TURRS : 91- 98: ckegq KCCfDgCG yiclt KALM_CHICK : 157- 164: csgvk KCCsNgCG htcqv KALM_HUMAN : 162- 169: csgvk KCCsNgCG htcqv SPAI_PIG : 47- 54: cpgvk KCCeGfCG kdcly WAP_CAMDR : 97- 104: cegnk KCCfSsCA mrcld WAP_MOUSE : 114- 121: csgnm KCCnVdCV mtctp WAP_RABIT : 107- 114: crgdk KCCfSrCA mryle WAP_RAT : 113- 120: csgtm KCCkNgCI mscmd WDNM_RAT : 45- 52: cpniq KCCsNgCG hvcks F 6: 17.5834 15( 13) C-C-x-[DGNSV]-x-C-[AG] Occurences: 15(13) ALK1_HUMAN : 63- 69: pgkkr CCpDtCG ikcld ALK1_HUMAN : 117- 123: krdlk CCmGmCG kscvs ALK1_PIG : 46- 52: pdkkk CCrDtCA ikcln ALK1_PIG : 100- 106: lgdlk CCkSmCG kvclt CALU_CAVPO : 42- 48: pkpqk CCpGyCG kqcyq ELAF_HUMAN : 104- 110: pgikk CCeGsCG macfv IBP_TURRS : 92- 98: kegqk CCfDgCG yiclt KALM_CHICK : 158- 164: sgvkk CCsNgCG htcqv KALM_HUMAN : 163- 169: sgvkk CCsNgCG htcqv SPAI_PIG : 48- 54: pgvkk CCeGfCG kdcly WAP_CAMDR : 98- 104: egnkk CCfSsCA mrcld WAP_MOUSE : 60- 66: aqnam CCpVsCG rtrkt WAP_RABIT : 108- 114: rgdkk CCfSrCA mryle WAP_RAT : 60- 66: aqndm CCpSsCG rsckt WDNM_RAT : 46- 52: pniqk CCsNgCG hvcks G 7: 13.7542 16( 13) K-x-[DGQT]-x-C-x(0,2)-P Occurences: 16(13) ALK1_HUMAN : 31- 36: sgksf KaGvC--P pkksa ALK1_HUMAN : 31- 37: sgksf KaGvCp-P kksaq ALK1_HUMAN : 85- 90: nptrr KpGkC--P vtygq ALK1_PIG : 14- 19: aenal KgGaC--P prkiv ALK1_PIG : 14- 20: aenal KgGaCp-P rkivq ALK1_PIG : 68- 73: npvkv KpGkC--P vvygq CALU_CAVPO : 38- 44: dydcp KpQkCc-P gycgk ELAF_HUMAN : 72- 77: gpvst KpGsC--P iilir ELAF_HUMAN : 94- 99: pnrcl KdTdC--P gikkc IBP_TURRS : 4- 11: qgd KrDiCrlP peqgp KALM_CHICK : 125- 130: yilsv KqGdC--P apeka KALM_CHICK : 125- 132: yilsv KqGdCpaP ekasg KALM_HUMAN : 130- 135: yillv KqGdC--P apeka KALM_HUMAN : 130- 137: yillv KqGdCpaP ekasg SPAI_PIG : 16- 21: rflls KrGhC--P rilfr WAP_CAMDR : 64- 69: pepvl KdGrC--P wvqtp WAP_MOUSE : 79- 84: nigvp KaGfC--P wnslq WAP_RABIT : 74- 79: ivptp KaGrC--P wvqap WAP_RAT : 79- 84: nievq KaGrC--P wnpiq WDNM_RAT : 15- 20: ptkle KpGkC--P knppr H 8: 13.7084 22( 13) C-x(1,2)-G-x(1,3)-C-[CGP] Occurences: 22(13) ALK1_HUMAN : 57- 64: qsdwq Cp-GkkrCC pdtcg ALK1_HUMAN : 117- 123: krdlk CcmGm--CG kscvs ALK1_HUMAN : 118- 123: rdlkc Cm-Gm--CG kscvs ALK1_PIG : 94- 101: ktdsq Cl-GdlkCC ksmcg CALU_CAVPO : 42- 48: pkpqk CcpGy--CG kqcyq CALU_CAVPO : 43- 48: kpqkc Cp-Gy--CG kqcyq ELAF_HUMAN : 98- 105: lkdtd Cp-GikkCC egscg ELAF_HUMAN : 104- 110: pgikk CceGs--CG macfv ELAF_HUMAN : 105- 110: gikkc Ce-Gs--CG macfv IBP_TURRS : 86- 93: dsdsd CkeGqk-CC fdgcg KALM_CHICK : 152- 159: eadse Cs-GvkkCC sngcg KALM_HUMAN : 157- 164: evdne Cs-GvkkCC sngcg SPAI_PIG : 42- 49: wrdyd Cp-GvkkCC egfcg SPAI_PIG : 48- 54: pgvkk CceGf--CG kdcly SPAI_PIG : 49- 54: gvkkc Ce-Gf--CG kdcly WAP_CAMDR : 34- 41: vndes CpqGtk-CC arspc WAP_CAMDR : 92- 99: srddq Ce-GnkkCC fssca WAP_MOUSE : 109- 116: ssdre Cs-GnmkCC nvdcv WAP_RABIT : 49- 56: lsdnd Cl-GstvCC psaag WAP_RABIT : 102- 109: andie Cr-GdkkCC fsrca WAP_RAT : 108- 115: sidsd Cs-GtmkCC kngci WDNM_RAT : 34- 41: tcvel Cs-GdqsCP niqkc I 9: 12.9195 18( 13) G-x(0,2)-K-x(0,1)-C-x(2)-[DGNPS] Occurences: 18(13) ALK1_HUMAN : 59- 66: dwqcp Gk-KrCcpD tcgik ALK1_HUMAN : 69- 75: cpdtc Gi-K-CldP vdtpn ALK1_HUMAN : 123- 129: cmgmc G--KsCvsP vka ALK1_PIG : 96- 103: dsqcl GdlK-CckS mcgkv ALK1_PIG : 106- 112: cksmc G--KvCltP vka CALU_CAVPO : 48- 54: cpgyc G--KqCyqP e ELAF_HUMAN : 100- 107: dtdcp GikK-CceG scgma ELAF_HUMAN : 100- 107: dtdcp Gi-KkCceG scgma ELAF_HUMAN : 100- 108: dtdcp GikKcCegS cgmac IBP_TURRS : 89- 95: sdcke Gq-K-CcfD gcgyi IBP_TURRS : 89- 96: sdcke Gq-KcCfdG cgyic KALM_CHICK : 154- 161: dsecs GvkK-CcsN gcght KALM_CHICK : 154- 161: dsecs Gv-KkCcsN gcght KALM_CHICK : 154- 162: dsecs GvkKcCsnG cghtc KALM_HUMAN : 159- 166: dnecs GvkK-CcsN gcght KALM_HUMAN : 159- 166: dnecs Gv-KkCcsN gcght KALM_HUMAN : 159- 167: dnecs GvkKcCsnG cghtc SPAI_PIG : 44- 51: dydcp GvkK-CceG fcgkd SPAI_PIG : 44- 51: dydcp Gv-KkCceG fcgkd SPAI_PIG : 54- 60: cegfc G--KdClyP k WAP_CAMDR : 37- 44: escpq Gt-KcCarS pcsrs WAP_CAMDR : 94- 101: ddqce GnkK-CcfS scamr WAP_CAMDR : 94- 101: ddqce Gn-KkCcfS scamr WAP_CAMDR : 94- 102: ddqce GnkKcCfsS camrc WAP_MOUSE : 111- 119: drecs GnmKcCnvD cvmtc WAP_RABIT : 104- 111: diecr GdkK-CcfS rcamr WAP_RABIT : 104- 111: diecr Gd-KkCcfS rcamr WAP_RAT : 110- 117: dsdcs GtmK-CckN gcims WAP_RAT : 110- 118: dsdcs GtmKcCknG cimsc WDNM_RAT : 17- 22: klekp G--K-CpkN pprsi J 10: 12.5102 17( 13) G-x-C-P Occurences: 17(13) ALK1_HUMAN : 33- 36: ksfka GvCP pkksa ALK1_HUMAN : 87- 90: trrkp GkCP vtygq ALK1_PIG : 16- 19: nalkg GaCP prkiv ALK1_PIG : 70- 73: vkvkp GkCP vvygq CALU_CAVPO : 12- 15: ainrp GsCP rvmiy ELAF_HUMAN : 74- 77: vstkp GsCP iilir IBP_TURRS : 65- 68: pperp GvCP ktsgp KALM_CHICK : 127- 130: lsvkq GdCP apeka KALM_HUMAN : 132- 135: llvkq GdCP apeka SPAI_PIG : 18- 21: llskr GhCP rilfr WAP_CAMDR : 66- 69: pvlkd GrCP wvqtp WAP_MOUSE : 81- 84: gvpka GfCP wnslq WAP_MOUSE : 95- 98: tisst GpCP mkiec WAP_RABIT : 76- 79: ptpka GrCP wvqap WAP_RAT : 81- 84: evqka GrCP wnpiq WAP_RAT : 94- 97: qmiaa GpCP kdnpc WDNM_RAT : 17- 20: klekp GkCP knppr K 11: 12.4365 18( 13) C-x(0,1)-G-x(1,3)-C-x(3)-[ACDGSTV] Occurences: 18(13) ALK1_HUMAN : 57- 67: qsdwq CpGkkrCcpdT cgikc ALK1_HUMAN : 68- 76: ccpdt C-Gik-CldpV dtpnp ALK1_HUMAN : 118- 126: rdlkc CmGm--CgksC vspvk ALK1_HUMAN : 122- 130: ccmgm C-Gks-CvspV ka ALK1_PIG : 105- 113: ccksm C-Gkv-CltpV ka CALU_CAVPO : 43- 51: kpqkc CpGy--CgkqC yqpe ELAF_HUMAN : 98- 108: lkdtd CpGikkCcegS cgmac ELAF_HUMAN : 105- 113: gikkc CeGs--CgmaC fvpq IBP_TURRS : 97- 105: ccfdg C-Gyi-CltvA psgsp KALM_CHICK : 152- 162: eadse CsGvkkCcsnG cghtc KALM_HUMAN : 157- 167: evdne CsGvkkCcsnG cghtc SPAI_PIG : 49- 57: gvkkc CeGf--CgkdC lypk WAP_CAMDR : 92- 102: srddq CeGnkkCcfsS camrc WAP_MOUSE : 109- 119: ssdre CsGnmkCcnvD cvmtc WAP_RABIT : 49- 59: lsdnd ClGstvCcpsA aggsc WAP_RAT : 65- 73: ccpss C-Grs-CktpV nievq WAP_RAT : 108- 118: sidsd CsGtmkCcknG cimsc WDNM_RAT : 51- 59: ccsng C-Ghv-CkspV f L 12: 11.5102 23( 13) C-x(0,1)-G-x(2,3)-C Occurences: 23(13) ALK1_HUMAN : 57- 63: qsdwq CpGkkrC cpdtc ALK1_HUMAN : 68- 72: ccpdt C-Gik-C ldpvd ALK1_HUMAN : 122- 126: ccmgm C-Gks-C vspvk ALK1_PIG : 94- 100: ktdsq ClGdlkC cksmc ALK1_PIG : 105- 109: ccksm C-Gkv-C ltpvk CALU_CAVPO : 47- 51: ccpgy C-Gkq-C yqpe ELAF_HUMAN : 98- 104: lkdtd CpGikkC cegsc ELAF_HUMAN : 109- 113: ccegs C-Gma-C fvpq IBP_TURRS : 97- 101: ccfdg C-Gyi-C ltvap KALM_CHICK : 152- 158: eadse CsGvkkC csngc KALM_CHICK : 163- 167: ccsng C-Ght-C qvpkn KALM_HUMAN : 157- 163: evdne CsGvkkC csngc KALM_HUMAN : 168- 172: ccsng C-Ght-C qvpkt SPAI_PIG : 42- 48: wrdyd CpGvkkC cegfc SPAI_PIG : 53- 57: ccegf C-Gkd-C lypk WAP_CAMDR : 92- 98: srddq CeGnkkC cfssc WAP_MOUSE : 109- 115: ssdre CsGnmkC cnvdc WAP_RABIT : 49- 55: lsdnd ClGstvC cpsaa WAP_RABIT : 102- 108: andie CrGdkkC cfsrc WAP_RAT : 65- 69: ccpss C-Grs-C ktpvn WAP_RAT : 108- 114: sidsd CsGtmkC ckngc WDNM_RAT : 34- 40: tcvel CsGdqsC pniqk WDNM_RAT : 51- 55: ccsng C-Ghv-C kspvf M 13: 11.0340 16( 13) C-P-x(4)-[ACP] Occurences: 16(13) ALK1_HUMAN : 35- 41: fkagv CPpkksA qclry ALK1_HUMAN : 57- 63: qsdwq CPgkkrC cpdtc ALK1_PIG : 40- 46: tsdwq CPdkkkC crdtc CALU_CAVPO : 21- 27: rvmiy CParhpP nkcts CALU_CAVPO : 36- 42: tsdyd CPkpqkC cpgyc ELAF_HUMAN : 98- 104: lkdtd CPgikkC cegsc IBP_TURRS : 67- 73: erpgv CPktsgP giclh KALM_CHICK : 129- 135: vkqgd CPapekA sgfaa KALM_HUMAN : 134- 140: vkqgd CPapekA sgfaa SPAI_PIG : 42- 48: wrdyd CPgvkkC cegfc WAP_CAMDR : 34- 40: vndes CPqgtkC carsp WAP_CAMDR : 68- 74: lkdgr CPwvqtP ltakh WAP_MOUSE : 97- 103: sstgp CPmkieC ssdre WAP_RABIT : 78- 84: pkagr CPwvqaP mlsql WAP_RAT : 96- 102: iaagp CPkdnpC sidsd WDNM_RAT : 40- 46: sgdqs CPniqkC csngc N 14: 11.0102 19( 13) G-x(1,3)-C-x(3,4)-C Occurences: 19(13) ALK1_HUMAN : 59- 68: dwqcp GkkrCcpdtC gikcl ALK1_HUMAN : 120- 126: lkccm Gm--Cgks-C vspvk ALK1_PIG : 96- 105: dsqcl GdlkCcksmC gkvcl CALU_CAVPO : 45- 51: qkccp Gy--Cgkq-C yqpe ELAF_HUMAN : 100- 109: dtdcp GikkCcegsC gmacf ELAF_HUMAN : 107- 113: kkcce Gs--Cgma-C fvpq IBP_TURRS : 72- 80: cpkts GpgiClhg-C dsdsd IBP_TURRS : 74- 80: ktsgp Gi--Clhg-C dsdsd IBP_TURRS : 89- 97: sdcke GqkcCfdg-C gyicl IBP_TURRS : 89- 97: sdcke Gqk-CcfdgC gyicl KALM_CHICK : 154- 163: dsecs GvkkCcsngC ghtcq KALM_HUMAN : 159- 168: dnecs GvkkCcsngC ghtcq SPAI_PIG : 44- 53: dydcp GvkkCcegfC gkdcl SPAI_PIG : 51- 57: kkcce Gf--Cgkd-C lypk WAP_CAMDR : 37- 46: escpq GtkcCarspC srsct WAP_CAMDR : 94- 103: ddqce GnkkCcfssC amrcl WAP_MOUSE : 111- 120: drecs GnmkCcnvdC vmtct WAP_RABIT : 104- 113: diecr GdkkCcfsrC amryl WAP_RAT : 110- 119: dsdcs GtmkCckngC imscm WDNM_RAT : 28- 34: pprsi Gt--Cvel-C sgdqs O 15: 10.5102 23( 13) K-x(1,3)-C-x(0,2)-P Occurences: 23(13) ALK1_HUMAN : 31- 36: sgksf KagvC--P pkksa ALK1_HUMAN : 31- 37: sgksf KagvCp-P kksaq ALK1_HUMAN : 60- 65: wqcpg KkrcC--P dtcgi ALK1_HUMAN : 60- 65: wqcpg Kkr-Cc-P dtcgi ALK1_HUMAN : 61- 65: qcpgk Krc-C--P dtcgi ALK1_HUMAN : 61- 65: qcpgk Kr--Cc-P dtcgi ALK1_HUMAN : 85- 90: nptrr KpgkC--P vtygq ALK1_HUMAN : 124- 129: mgmcg Ks--CvsP vka ALK1_PIG : 14- 19: aenal KggaC--P prkiv ALK1_PIG : 14- 20: aenal KggaCp-P rkivq ALK1_PIG : 68- 73: npvkv KpgkC--P vvygq ALK1_PIG : 107- 112: ksmcg Kv--CltP vka CALU_CAVPO : 38- 44: dydcp KpqkCc-P gycgk CALU_CAVPO : 41- 44: cpkpq Kc--C--P gycgk CALU_CAVPO : 49- 54: pgycg Kq--CyqP e ELAF_HUMAN : 72- 77: gpvst KpgsC--P iilir ELAF_HUMAN : 94- 99: pnrcl KdtdC--P gikkc IBP_TURRS : 4- 11: qgd KrdiCrlP peqgp KALM_CHICK : 125- 130: yilsv KqgdC--P apeka KALM_CHICK : 125- 132: yilsv KqgdCpaP ekasg KALM_HUMAN : 130- 135: yillv KqgdC--P apeka KALM_HUMAN : 130- 137: yillv KqgdCpaP ekasg SPAI_PIG : 16- 21: rflls KrghC--P rilfr SPAI_PIG : 55- 60: egfcg Kd--ClyP k WAP_CAMDR : 64- 69: pepvl KdgrC--P wvqtp WAP_MOUSE : 79- 84: nigvp KagfC--P wnslq WAP_RABIT : 74- 79: ivptp KagrC--P wvqap WAP_RAT : 79- 84: nievq KagrC--P wnpiq WDNM_RAT : 15- 20: ptkle KpgkC--P knppr P 16: 10.5102 28( 13) C-x(0,2)-S-x(3,5)-C Occurences: 28(13) ALK1_HUMAN : 51- 57: ykkpe Cq-Sdwq--C pgkkr ALK1_PIG : 34- 40: yekpk Ct-Sdwq--C pdkkk ALK1_PIG : 100- 109: lgdlk CckSmcgkvC ltpvk ALK1_PIG : 101- 109: gdlkc Ck-SmcgkvC ltpvk CALU_CAVPO : 30- 36: hppnk Ct-Sdyd--C pkpqk ELAF_HUMAN : 105- 113: gikkc CegScgma-C fvpq IBP_TURRS : 33- 41: pasrm Ce-SfiyggC kgnkn IBP_TURRS : 80- 86: iclhg Cd-Sdsd--C kegqk KALM_CHICK : 78- 85: qnhkq C--SkclepC keswd KALM_CHICK : 152- 158: eadse C--Sgvkk-C csngc KALM_CHICK : 152- 159: eadse C--SgvkkcC sngcg KALM_HUMAN : 83- 90: qnhkq C--SkclepC kesgd KALM_HUMAN : 157- 163: evdne C--Sgvkk-C csngc KALM_HUMAN : 157- 164: evdne C--SgvkkcC sngcg SPAI_PIG : 27- 36: rilfr CplSnpsnkC wrdyd WAP_CAMDR : 41- 50: qgtkc CarSpcsrsC tvplm WAP_CAMDR : 86- 92: leknd C--Srddq-C egnkk WAP_CAMDR : 98- 107: egnkk CcfSscamrC ldpvt WAP_CAMDR : 99- 107: gnkkc CfsScamr-C ldpvt WAP_CAMDR : 99- 107: gnkkc Cf-SscamrC ldpvt WAP_MOUSE : 103- 109: pmkie Cs-Sdre--C sgnmk WAP_MOUSE : 103- 109: pmkie C--Ssdre-C sgnmk WAP_MOUSE : 109- 115: ssdre C--Sgnmk-C cnvdc WAP_MOUSE : 109- 116: ssdre C--SgnmkcC nvdcv WAP_RABIT : 43- 49: seetl Cl-Sdnd--C lgstv WAP_RABIT : 49- 56: lsdnd ClgStvc--C psaag WAP_RABIT : 55- 64: lgstv CcpSaaggsC rtpii WAP_RABIT : 56- 64: gstvc Cp-SaaggsC rtpii WAP_RAT : 60- 69: aqndm CcpSscgrsC ktpvn WAP_RAT : 61- 69: qndmc CpsScgrs-C ktpvn WAP_RAT : 61- 69: qndmc Cp-SscgrsC ktpvn WAP_RAT : 102- 108: pkdnp C--Sidsd-C sgtmk WAP_RAT : 108- 114: sidsd C--Sgtmk-C ckngc WAP_RAT : 108- 115: sidsd C--SgtmkcC kngci WDNM_RAT : 34- 40: tcvel C--Sgdqs-C pniqk Q 17: 8.3401 24( 13) C-x(2)-P Occurences: 24(13) ALK1_HUMAN : 72- 75: tcgik CldP vdtpn ALK1_HUMAN : 126- 129: mcgks CvsP vka ALK1_PIG : 55- 58: tcaik ClnP vaitn ALK1_PIG : 109- 112: mcgkv CltP vka CALU_CAVPO : 36- 39: tsdyd CpkP qkccp CALU_CAVPO : 51- 54: ycgkq CyqP e ELAF_HUMAN : 113- 116: scgma CfvP q IBP_TURRS : 8- 11: dkrdi CrlP peqgp IBP_TURRS : 58- 61: ecvra CrpP erpgv KALM_CHICK : 81- 84: kqcsk CleP ckesw KALM_CHICK : 129- 132: vkqgd CpaP ekasg KALM_CHICK : 167- 170: gcght CqvP knlyk KALM_HUMAN : 86- 89: kqcsk CleP ckesg KALM_HUMAN : 134- 137: vkqgd CpaP ekasg KALM_HUMAN : 172- 175: gcght CqvP ktlyk SPAI_PIG : 57- 60: fcgkd ClyP k WAP_CAMDR : 50- 53: pcsrs CtvP lmvss WAP_CAMDR : 107- 110: scamr CldP vteds WAP_MOUSE : 124- 127: dcvmt CtpP vpvit WAP_RABIT : 32- 35: pvqvm CpeP sssee WAP_RABIT : 64- 67: aaggs CrtP iivpt WAP_RAT : 69- 72: scgrs CktP vniev WAP_RAT : 123- 126: gcims CmdP epksp WDNM_RAT : 55- 58: gcghv CksP vf R 18: 8.3401 30( 13) K-x-C Occurences: 30(13) ALK1_HUMAN : 61- 63: qcpgk KrC cpdtc ALK1_HUMAN : 116- 118: ckrdl KcC mgmcg ALK1_HUMAN : 124- 126: mgmcg KsC vspvk ALK1_PIG : 44- 46: qcpdk KkC crdtc ALK1_PIG : 45- 47: cpdkk KcC rdtca ALK1_PIG : 99- 101: clgdl KcC ksmcg ALK1_PIG : 107- 109: ksmcg KvC ltpvk CALU_CAVPO : 41- 43: cpkpq KcC pgycg CALU_CAVPO : 49- 51: pgycg KqC yqpe ELAF_HUMAN : 102- 104: dcpgi KkC cegsc ELAF_HUMAN : 103- 105: cpgik KcC egscg IBP_TURRS : 91- 93: ckegq KcC fdgcg KALM_CHICK : 76- 78: wcqnh KqC skcle KALM_CHICK : 156- 158: ecsgv KkC csngc KALM_CHICK : 157- 159: csgvk KcC sngcg KALM_HUMAN : 81- 83: wcqnh KqC skcle KALM_HUMAN : 161- 163: ecsgv KkC csngc KALM_HUMAN : 162- 164: csgvk KcC sngcg SPAI_PIG : 46- 48: dcpgv KkC cegfc SPAI_PIG : 47- 49: cpgvk KcC egfcg SPAI_PIG : 55- 57: egfcg KdC lypk WAP_CAMDR : 39- 41: cpqgt KcC arspc WAP_CAMDR : 78- 80: tplta KhC leknd WAP_CAMDR : 96- 98: qcegn KkC cfssc WAP_CAMDR : 97- 99: cegnk KcC fssca WAP_MOUSE : 114- 116: csgnm KcC nvdcv WAP_RABIT : 106- 108: ecrgd KkC cfsrc WAP_RABIT : 107- 109: crgdk KcC fsrca WAP_RAT : 113- 115: csgtm KcC kngci WDNM_RAT : 45- 47: cpniq KcC sngcg S 19: 8.3401 29( 13) G-x-C Occurences: 29(13) ALK1_HUMAN : 33- 35: ksfka GvC ppkks ALK1_HUMAN : 87- 89: trrkp GkC pvtyg ALK1_HUMAN : 94- 96: cpvty GqC lmlnp ALK1_HUMAN : 109- 111: fcemd GqC krdlk ALK1_HUMAN : 120- 122: lkccm GmC gkscv ALK1_PIG : 16- 18: nalkg GaC pprki ALK1_PIG : 70- 72: vkvkp GkC pvvyg ALK1_PIG : 77- 79: cpvvy GqC mmlnp CALU_CAVPO : 12- 14: ainrp GsC prvmi CALU_CAVPO : 45- 47: qkccp GyC gkqcy ELAF_HUMAN : 74- 76: vstkp GsC piili ELAF_HUMAN : 107- 109: kkcce GsC gmacf IBP_TURRS : 15- 17: lppeq GpC kgrip IBP_TURRS : 39- 41: esfiy GgC kgnkn IBP_TURRS : 65- 67: pperp GvC pktsg IBP_TURRS : 74- 76: ktsgp GiC lhgcd KALM_CHICK : 127- 129: lsvkq GdC papek KALM_HUMAN : 132- 134: llvkq GdC papek SPAI_PIG : 18- 20: llskr GhC prilf SPAI_PIG : 51- 53: kkcce GfC gkdcl WAP_CAMDR : 66- 68: pvlkd GrC pwvqt WAP_MOUSE : 81- 83: gvpka GfC pwnsl WAP_MOUSE : 95- 97: tisst GpC pmkie WAP_RABIT : 62- 64: psaag GsC rtpii WAP_RABIT : 76- 78: ptpka GrC pwvqa WAP_RAT : 81- 83: evqka GrC pwnpi WAP_RAT : 94- 96: qmiaa GpC pkdnp WDNM_RAT : 17- 19: klekp GkC pknpp WDNM_RAT : 28- 30: pprsi GtC velcs T 20: 8.3401 19( 13) C-x-G Occurences: 19(13) ALK1_HUMAN : 57- 59: qsdwq CpG kkrcc ALK1_HUMAN : 118- 120: rdlkc CmG mcgks ALK1_PIG : 94- 96: ktdsq ClG dlkcc CALU_CAVPO : 43- 45: kpqkc CpG ycgkq ELAF_HUMAN : 98- 100: lkdtd CpG ikkcc ELAF_HUMAN : 105- 107: gikkc CeG scgma IBP_TURRS : 17- 19: peqgp CkG ripry IBP_TURRS : 41- 43: fiygg CkG nknnf KALM_CHICK : 152- 154: eadse CsG vkkcc KALM_HUMAN : 157- 159: evdne CsG vkkcc KALM_HUMAN : 536- 538: hkpig ClG eaghv SPAI_PIG : 42- 44: wrdyd CpG vkkcc SPAI_PIG : 49- 51: gvkkc CeG fcgkd WAP_CAMDR : 92- 94: srddq CeG nkkcc WAP_MOUSE : 109- 111: ssdre CsG nmkcc WAP_RABIT : 49- 51: lsdnd ClG stvcc WAP_RABIT : 102- 104: andie CrG dkkcc WAP_RAT : 108- 110: sidsd CsG tmkcc WDNM_RAT : 34- 36: tcvel CsG dqscp Number of patterns evaluated by Pratt:258 Total running time: 1 seconds