------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 2 sequences from file 43_KD_POSTSYNAPTIC PATTERN CONSERVATION: CM: min Nr of Seqs to Match 2 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename 43_KD_POSTSYNAPTIC.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PS43_MOUSE 411 PS43_TORCA 411 Pratt run started at Thu Feb 6 18:25:34 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 179.3121 2( 2) L-S-M-G-N-A-F-L-G-L-S-x-F-Q-K-A-L-E-x-F-E-K-A-L-R-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q 2: 178.8121 2( 2) L-S-x(0,1)-F-Q-K-A-L-E-x-F-E-K-A-L-R-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F 3: 178.8121 2( 2) Q-x(1,2)-L-S-M-G-N-A-F-L-G-L-S-x-F-Q-K-A-L-E-x-F-E-K-A-L-R-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y 4: 178.3121 2( 2) F-Q-K-A-L-E-x-F-E-K-A-L-R-Y-A-H-x(0,1)-N-x-D-x(1,2)-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K 5: 175.1421 2( 2) A-L-R-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x-A-E-L-V-x-D-Y-G 6: 175.1421 2( 2) K-A-L-R-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x-A-E-L-V-x-D-Y 7: 174.6421 2( 2) K-A-L-x(0,1)-Y-A-H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x-A-E-L-V-x-D-Y-G 8: 174.1421 2( 2) Y-H-M-A-x-A-Y-R-x(0,1)-L-x(0,1)-G-x(4)-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-x-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R-x-R 9: 174.1421 2( 2) S-x-Y-H-M-A-x-A-Y-R-x(0,1)-L-x(0,1)-G-x(4)-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-x-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R 10: 174.1421 2( 2) M-S-x-Y-H-M-A-x-A-Y-R-x(0,1)-L-x(0,1)-G-x(4)-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-x-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H 11: 174.1421 2( 2) A-M-S-x-Y-H-M-A-x-A-Y-R-x(0,1)-L-x(0,1)-G-x(4)-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-x-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I 12: 174.1421 2( 2) R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M-S-x-Y-H-M-A 13: 174.1421 2( 2) C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M-S-x-Y-H-M 14: 174.1421 2( 2) E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M-S-x-Y-H 15: 174.1421 2( 2) L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M-S-x-Y 16: 174.1421 2( 2) M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M-S 17: 174.1421 2( 2) D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A-M 18: 174.1421 2( 2) D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y-x-A 19: 174.1421 2( 2) N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K-Y 20: 174.1421 2( 2) H-x-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-x-F-Y-x-Q-x-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-x-D-Y-G-x-G-W-S-L-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 196.9667 2( 2) M-S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H B 2: 196.9667 2( 2) A-M-S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I C 3: 196.9667 2( 2) S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R D 4: 196.6269 2( 2) R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H-M-A E 5: 196.6269 2( 2) C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H-M F 6: 196.6269 2( 2) E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H G 7: 196.6269 2( 2) L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y H 8: 195.7914 2( 2) F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-x(0,1)-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K I 9: 195.3808 2( 2) L-S-M-G-N-A-F-L-G-L-S-[AL]-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q J 10: 194.8944 2( 2) L-S-x(0,1)-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F K 11: 194.4120 2( 2) A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y-G L 12: 194.4120 2( 2) K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y M 13: 193.9120 2( 2) K-A-L-x(0,1)-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y-G N 14: 193.7959 2( 2) Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R-x-R O 15: 193.4810 2( 2) H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K P 16: 193.4561 2( 2) M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S Q 17: 193.4561 2( 2) D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M R 18: 193.4561 2( 2) D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A S 19: 191.6950 2( 2) Q-x(1,2)-L-S-M-G-N-A-F-L-G-L-S-[AL]-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y T 20: 190.2079 2( 2) N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y Best patterns with alignements: fitness hits(seqs) Pattern A 1: 196.9667 2( 2) M-S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H Occurences: 2(2) PS43_MOUSE : 206- 255: lkyra MSQYHMAVAYRlL-GHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIH rsrgd PS43_MOUSE : 206- 255: lkyra MSQYHMAVAYR-LlGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIH rsrgd PS43_TORCA : 206- 255: lkyka MSRYHMAAAYRkL-GRMDDAMECCEESMKIALQHQDRPLQALCLLCFADIH rhrsd B 2: 196.9667 2( 2) A-M-S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I Occurences: 2(2) PS43_MOUSE : 205- 254: slkyr AMSQYHMAVAYRlL-GHLGSAMECCEESMKIALQHGDRPLQALCLLCFADI hrsrg PS43_MOUSE : 205- 254: slkyr AMSQYHMAVAYR-LlGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADI hrsrg PS43_TORCA : 205- 254: slkyk AMSRYHMAAAYRkL-GRMDDAMECCEESMKIALQHQDRPLQALCLLCFADI hrhrs C 3: 196.9667 2( 2) S-[QR]-Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R Occurences: 2(2) PS43_MOUSE : 207- 256: kyram SQYHMAVAYRlL-GHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHR srgdl PS43_MOUSE : 207- 256: kyram SQYHMAVAYR-LlGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHR srgdl PS43_TORCA : 207- 256: kykam SRYHMAAAYRkL-GRMDDAMECCEESMKIALQHQDRPLQALCLLCFADIHR hrsdi D 4: 196.6269 2( 2) R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H-M-A Occurences: 2(2) PS43_MOUSE : 163- 212: tmlec RVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAMSQYHMA vayrl PS43_MOUSE : 163- 212: tmlec RVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAMSQYHMA vayrl PS43_TORCA : 163- 212: kmlec RVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAMSRYHMA aayrk E 5: 196.6269 2( 2) C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H-M Occurences: 2(2) PS43_MOUSE : 162- 211: dtmle CRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAMSQYHM avayr PS43_MOUSE : 162- 211: dtmle CRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAMSQYHM avayr PS43_TORCA : 162- 211: dkmle CRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAMSRYHM aaayr F 6: 196.6269 2( 2) E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y-H Occurences: 2(2) PS43_MOUSE : 161- 210: ddtml ECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAMSQYH mavay PS43_MOUSE : 161- 210: ddtml ECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAMSQYH mavay PS43_TORCA : 161- 210: ddkml ECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAMSRYH maaay G 7: 196.6269 2( 2) L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S-[QR]-Y Occurences: 2(2) PS43_MOUSE : 160- 209: nddtm LECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAMSQY hmava PS43_MOUSE : 160- 209: nddtm LECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAMSQY hmava PS43_TORCA : 160- 209: nddkm LECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAMSRY hmaaa H 8: 195.7914 2( 2) F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-x(0,1)-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K Occurences: 2(2) PS43_MOUSE : 138- 187: lglsl FQKALESFEKALRYAHnNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCK aaelv PS43_TORCA : 138- 187: lglsa FQKALECFEKALRYAHgNDDkMLECRVCCSLGAFYVQLKDYEKALFFPCK saelv I 9: 195.3808 2( 2) L-S-M-G-N-A-F-L-G-L-S-[AL]-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q Occurences: 2(2) PS43_MOUSE : 126- 174: ggqvs LSMGNAFLGLSLFQKALESFEKALRYAHNNDDtMLECRVCCSLGSFYAQ vkdye PS43_TORCA : 126- 174: ngqvc LSMGNAFLGLSAFQKALECFEKALRYAHGNDDkMLECRVCCSLGAFYVQ lkdye J 10: 194.8944 2( 2) L-S-x(0,1)-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F Occurences: 2(2) PS43_MOUSE : 135- 184: naflg LSlFQKALESFEKALRYAHNNDDtMLECRVCCSLGSFYAQVKDYEKALFF pckaa PS43_TORCA : 135- 184: naflg LSaFQKALECFEKALRYAHGNDDkMLECRVCCSLGAFYVQLKDYEKALFF pcksa K 11: 194.4120 2( 2) A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y-G Occurences: 2(2) PS43_MOUSE : 148- 196: esfek ALRYAHNNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYG kgwsl PS43_TORCA : 148- 196: ecfek ALRYAHGNDDkMLECRVCCSLGAFYVQLKDYEKALFFPCKSAELVADYG rgwsl L 12: 194.4120 2( 2) K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y Occurences: 2(2) PS43_MOUSE : 147- 195: lesfe KALRYAHNNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDY gkgws PS43_TORCA : 147- 195: lecfe KALRYAHGNDDkMLECRVCCSLGAFYVQLKDYEKALFFPCKSAELVADY grgws M 13: 193.9120 2( 2) K-A-L-x(0,1)-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-[AS]-A-E-L-V-[AN]-D-Y-G Occurences: 2(2) PS43_MOUSE : 147- 196: lesfe KALrYAHNNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYG kgwsl PS43_TORCA : 147- 196: lecfe KALrYAHGNDDkMLECRVCCSLGAFYVQLKDYEKALFFPCKSAELVADYG rgwsl N 14: 193.7959 2( 2) Y-H-M-A-[AV]-A-Y-R-x(0,1)-L-x(0,1)-G-[HR]-[LM]-[DG]-[DS]-A-M-E-C-C-E-E-S-M-K-I-A-L-Q-H-[GQ]-D-R-P-L-Q-A-L-C-L-L-C-F-A-D-I-H-R-x-R Occurences: 2(2) PS43_MOUSE : 209- 258: ramsq YHMAVAYRlL-GHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRsR gdlet PS43_MOUSE : 209- 258: ramsq YHMAVAYR-LlGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRsR gdlet PS43_TORCA : 209- 258: kamsr YHMAAAYRkL-GRMDDAMECCEESMKIALQHQDRPLQALCLLCFADIHRhR sdigk O 15: 193.4810 2( 2) H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K Occurences: 2(2) PS43_MOUSE : 153- 202: alrya HNNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLK yrams PS43_MOUSE : 153- 202: alrya HNNDDtMLECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLK yrams PS43_TORCA : 153- 202: alrya HGNDDkMLECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLK ykams P 16: 193.4561 2( 2) M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M-S Occurences: 2(2) PS43_MOUSE : 159- 207: nnddt MLECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAMS qyhma PS43_MOUSE : 159- 207: nnddt MLECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAMS qyhma PS43_TORCA : 159- 207: gnddk MLECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAMS ryhma Q 17: 193.4561 2( 2) D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A-M Occurences: 2(2) PS43_MOUSE : 157- 206: ahnnd DtMLECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRAM sqyhm PS43_MOUSE : 157- 206: ahnnd DtMLECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRAM sqyhm PS43_TORCA : 157- 206: ahgnd DkMLECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKAM sryhm R 18: 193.4561 2( 2) D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y-[KR]-A Occurences: 2(2) PS43_MOUSE : 156- 205: yahnn DDtMLECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKYRA msqyh PS43_MOUSE : 156- 205: yahnn DDtMLECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKYRA msqyh PS43_TORCA : 156- 205: yahgn DDkMLECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKYKA msryh S 19: 191.6950 2( 2) Q-x(1,2)-L-S-M-G-N-A-F-L-G-L-S-[AL]-F-Q-K-A-L-E-[CS]-F-E-K-A-L-R-Y-A-H-[GN]-N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y Occurences: 2(2) PS43_MOUSE : 123- 172: aqlgg QvsLSMGNAFLGLSLFQKALESFEKALRYAHNNDDtMLECRVCCSLGSFY aqvkd PS43_TORCA : 123- 172: lqfng QvcLSMGNAFLGLSAFQKALECFEKALRYAHGNDDkMLECRVCCSLGAFY vqlkd T 20: 190.2079 2( 2) N-D-D-x-M-L-E-C-R-V-C-C-S-L-G-[AS]-F-Y-[AV]-Q-[LV]-K-D-Y-E-K-A-L-F-F-P-C-K-x(0,1)-A-x(0,1)-E-L-V-[AN]-D-Y-G-[KR]-G-W-S-L-K-Y Occurences: 2(2) PS43_MOUSE : 155- 203: ryahn NDDtMLECRVCCSLGSFYAQVKDYEKALFFPCKaA-ELVNDYGKGWSLKY ramsq PS43_MOUSE : 155- 203: ryahn NDDtMLECRVCCSLGSFYAQVKDYEKALFFPCK-AaELVNDYGKGWSLKY ramsq PS43_TORCA : 155- 203: ryahg NDDkMLECRVCCSLGAFYVQLKDYEKALFFPCKsA-ELVADYGRGWSLKY kamsr Number of patterns evaluated by Pratt:235357 Total running time: 22 seconds