------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file 3HCDH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename 3HCDH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CRYL_RABIT 319 ECHA_HUMAN 763 ECHP_HUMAN 722 ECHP_RAT 721 FADB_ECOLI 729 FAOB_PSEFR 715 HBD_CLODI 281 HCD1_CAEEL 298 HCD2_CAEEL 309 HCDH_PIG 307 MMGB_BACSU 287 Pratt run started at Thu Feb 6 18:25:28 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 11( 11) G-F-x(0,1)-V-x(3,4)-L 2: 15.6802 11( 11) P-x(3)-M-x(1,2)-L-x(1,2)-E 3: 15.6802 18( 11) F-x(1,2)-P-x(3)-M-x(1,2)-L 4: 15.6802 11( 11) G-x-G-x(0,1)-M-x(3,4)-I 5: 15.1802 15( 11) P-x(1,3)-M-x-L-x(1,2)-E 6: 15.1802 18( 11) F-x(0,2)-P-x(3)-M-x(1,2)-L 7: 12.0102 11( 11) G-x-K-x(4,5)-F 8: 12.0102 27( 11) A-x(3,4)-G-x(5)-G 9: 12.0102 12( 11) L-x(3,4)-G-x(3)-V 10: 12.0102 14( 11) P-x(2)-L-x(0,1)-D 11: 12.0102 13( 11) P-x(2,3)-L-x(4)-G 12: 12.0102 15( 11) G-x(2,3)-L-x(4)-G 13: 12.0102 20( 11) P-x(5)-L-x(4,5)-G 14: 12.0102 19( 11) A-x(1,2)-K-x-G 15: 12.0102 14( 11) G-x(2,3)-A-x(3)-A 16: 12.0102 13( 11) F-x(3)-R-x(0,1)-L 17: 12.0102 20( 11) L-V-x(0,1)-E 18: 12.0102 22( 11) L-x-E-x(0,1)-V 19: 12.0102 14( 11) M-x-L-x(1,2)-E 20: 12.0102 13( 11) E-A-x(1,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 34.0159 15( 11) P-x(1,3)-M-x-L-x(1,2)-E-[GIV]-[IMV]-x(4)-[DST]-[RS]-x(2)-[AET]-x(4)-[FIMV]-x(2)-[AGS] B 2: 30.4493 11( 11) M-x-L-x(1,2)-E-[GIV]-[IMV]-x(4)-[ADST]-[RS]-x(2)-[AET]-x(4)-[FIMV]-x(2)-[AGS] C 3: 20.8858 11( 11) G-x-G-x(0,1)-M-x(3,4)-I-[AGV]-x(3)-[ATV] D 4: 18.9056 18( 11) F-x(1,2)-P-x(3)-M-x(1,2)-L-x-[AE] E 5: 18.7740 11( 11) G-x(2,3)-L-x(4)-G-[ILV]-x-[AGTV]-x(3)-[AGILV] F 6: 18.4056 18( 11) F-x(0,2)-P-x(3)-M-x(1,2)-L-x-[AE] G 7: 17.3032 11( 11) P-x(2)-L-x(0,1)-D-x-[ILV]-x(2)-[DGS] H 8: 16.2390 13( 11) L-V-x(0,1)-E-[AGV]-x(2)-[ADEGST] I 9: 15.6802 11( 11) G-F-x(0,1)-V-x(3,4)-L J 10: 15.6802 11( 11) P-x(3)-M-x(1,2)-L-x(1,2)-E K 11: 15.2045 11( 11) F-x(2)-[NT]-R-x(0,1)-L L 12: 14.2494 12( 11) L-x-E-x(0,1)-V-[AIPV] M 13: 13.8888 14( 11) P-x(2)-[AGLPV]-x(2)-L-x(4,5)-G N 14: 13.4454 13( 11) P-x(2,3)-L-x(4)-G-x(3)-[ACGNSTV] O 15: 12.0102 11( 11) G-x-K-x(4,5)-F P 16: 12.0102 27( 11) A-x(3,4)-G-x(5)-G Q 17: 12.0102 12( 11) L-x(3,4)-G-x(3)-V R 18: 12.0102 19( 11) A-x(1,2)-K-x-G S 19: 12.0102 14( 11) G-x(2,3)-A-x(3)-A T 20: 12.0102 13( 11) F-x(3)-R-x(0,1)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 34.0159 15( 11) P-x(1,3)-M-x-L-x(1,2)-E-[GIV]-[IMV]-x(4)-[DST]-[RS]-x(2)-[AET]-x(4)-[FIMV]-x(2)-[AGS] Occurences: 15(11) CRYL_RABIT : 236- 264: yafig PletMhLnaEGMlsysDRysEgmkrVlkS fgsip ECHA_HUMAN : 502- 529: mhyfs PvdkMqLl-EIIttekTSkdTsasaVavG lkqgk ECHP_HUMAN : 435- 462: thffs PahvMkLl-EVIpsqySSptTiatvMnlS kkikk ECHP_RAT : 434- 461: thffs PahvMrLl-EVIpsrySSptTiatvMslS kkigk FADB_ECOLI : 454- 481: mhffn PvhrMpLv-EIIrgekSSdeTiakvVawA skmgk FAOB_PSEFR : 455- 482: mhffn PvhmMpLv-EVIrgekSSdlAvattVayA kkmgk HBD_CLODI : 141- 168: mhffn PvpmMkLv-EVIsgqlTSkvTfdtvFelS ksink HBD_CLODI : 143- 168: ffnpv Pm--MkLv-EVIsgqlTSkvTfdtvFelS ksink HCD1_CAEEL : 157- 184: lhffn PvpvMkLl-EVIrsddTSdeTyatlIkfG tavgk HCD1_CAEEL : 159- 184: ffnpv Pv--MkLl-EVIrsddTSdeTyatlIkfG tavgk HCD2_CAEEL : 169- 196: lhffn PvpmMkLl-EVVrhteTSdaTfnqlVdyG ktvgk HCD2_CAEEL : 171- 196: ffnpv Pm--MkLl-EVVrhteTSdaTfnqlVdyG ktvgk HCDH_PIG : 169- 194: lhfnv Pl--MkLv-EVVktpmTSqkTleslVdfS ktlgk MMGB_BACSU : 144- 171: mhfmn PvpvMkLv-EVIrglaTSeeTaldvMalA ekmgk MMGB_BACSU : 146- 171: fmnpv Pv--MkLv-EVIrglaTSeeTaldvMalA ekmgk B 2: 30.4493 11( 11) M-x-L-x(1,2)-E-[GIV]-[IMV]-x(4)-[ADST]-[RS]-x(2)-[AET]-x(4)-[FIMV]-x(2)-[AGS] Occurences: 11(11) CRYL_RABIT : 240- 264: gplet MhLnaEGMlsysDRysEgmkrVlkS fgsip ECHA_HUMAN : 506- 529: spvdk MqLl-EIIttekTSkdTsasaVavG lkqgk ECHP_HUMAN : 439- 462: spahv MkLl-EVIpsqySSptTiatvMnlS kkikk ECHP_RAT : 438- 461: spahv MrLl-EVIpsrySSptTiatvMslS kkigk FADB_ECOLI : 458- 481: npvhr MpLv-EIIrgekSSdeTiakvVawA skmgk FAOB_PSEFR : 459- 482: npvhm MpLv-EVIrgekSSdlAvattVayA kkmgk HBD_CLODI : 145- 168: npvpm MkLv-EVIsgqlTSkvTfdtvFelS ksink HCD1_CAEEL : 161- 184: npvpv MkLl-EVIrsddTSdeTyatlIkfG tavgk HCD2_CAEEL : 173- 196: npvpm MkLl-EVVrhteTSdaTfnqlVdyG ktvgk HCDH_PIG : 171- 194: fnvpl MkLv-EVVktpmTSqkTleslVdfS ktlgk MMGB_BACSU : 148- 171: npvpv MkLv-EVIrglaTSeeTaldvMalA ekmgk C 3: 20.8858 11( 11) G-x-G-x(0,1)-M-x(3,4)-I-[AGV]-x(3)-[ATV] Occurences: 11(11) CRYL_RABIT : 226- 239: lvmsd GlG-MryafIGpleT mhlna ECHA_HUMAN : 368- 381: hlail GaGlMgag-IAqvsV dkglk ECHP_HUMAN : 303- 316: svgvv GlGtMgrg-IVisfA rarip ECHP_RAT : 302- 315: svgvl GlGtMgrg-IAisfA rvgis FADB_ECOLI : 320- 333: qaavl GaGiMggg-IAyqsA wkgvp FAOB_PSEFR : 321- 334: qaavl GaGiMggg-IAyqsA skgtp HBD_CLODI : 7- 20: klavi GsGtMgsg-IVqtfA scghd HCD1_CAEEL : 18- 31: nvaiv GsGqMgsg-IAqvtA ssgfn HCD2_CAEEL : 29- 42: nvtii GaGlMgsg-IAqvsA nakln HCDH_PIG : 22- 35: hvtvi GgGlMgag-IAqvaA atght MMGB_BACSU : 10- 23: qimva GaGqMgsg-IAqtaA dagfy D 4: 18.9056 18( 11) F-x(1,2)-P-x(3)-M-x(1,2)-L-x-[AE] Occurences: 18(11) CRYL_RABIT : 233- 244: gmrya FigPletMh-LnA egmls ECHA_HUMAN : 500- 510: igmhy Fs-PvdkMq-LlE iitte ECHP_HUMAN : 432- 443: vigth FfsPahvMk-LlE vipsq ECHP_HUMAN : 433- 443: igthf Fs-PahvMk-LlE vipsq ECHP_RAT : 431- 442: vigth FfsPahvMr-LlE vipsr ECHP_RAT : 432- 442: igthf Fs-PahvMr-LlE vipsr FADB_ECOLI : 451- 462: fcgmh FfnPvhrMp-LvE iirge FADB_ECOLI : 452- 462: cgmhf Fn-PvhrMp-LvE iirge FAOB_PSEFR : 452- 463: fvgmh FfnPvhmMp-LvE virge FAOB_PSEFR : 453- 463: vgmhf Fn-PvhmMp-LvE virge HBD_CLODI : 138- 149: vigmh FfnPvpmMk-LvE visgq HBD_CLODI : 139- 149: igmhf Fn-PvpmMk-LvE visgq HCD1_CAEEL : 154- 165: fgglh FfnPvpvMk-LlE virsd HCD1_CAEEL : 155- 165: gglhf Fn-PvpvMk-LlE virsd HCD2_CAEEL : 166- 177: fgglh FfnPvpmMk-LlE vvrht HCD2_CAEEL : 167- 177: gglhf Fn-PvpmMk-LlE vvrht HCDH_PIG : 280- 291: sqnpl Fq-PspaMnkLvA enkfg MMGB_BACSU : 141- 152: vigmh FmnPvpvMk-LvE virgl E 5: 18.7740 11( 11) G-x(2,3)-L-x(4)-G-[ILV]-x-[AGTV]-x(3)-[AGILV] Occurences: 11(11) CRYL_RABIT : 6- 21: aspaa Gdv-LivgsGLvGrswA mlfas ECHA_HUMAN : 583- 599: fgfpv GaatLvdevGVdVakhV aedlg ECHP_HUMAN : 134- 150: lpgar GtqlLprltGVpAaldL itsgr ECHP_RAT : 133- 149: lpgar GtqlLprvvGVpValdL itsgk FADB_ECOLI : 536- 552: fgwpm GpayLldvvGIdTahhA qavma FAOB_PSEFR : 536- 552: fgwpm GpayLmdvvGIdTghhG rdvma HBD_CLODI : 224- 240: anhpm GplaLgdliGLdVvlaI mnvly HCD1_CAEEL : 240- 256: aghpm GpfeLadyiGLdTvkfV mdgwa HCD2_CAEEL : 252- 268: agypm GpfeLsdyvGLdTckfI mdgwh HCDH_PIG : 250- 266: agypm GpfeLldyvGLdTtkfI idgwh MMGB_BACSU : 227- 243: mnhpm GplaLadfiGLdTclsI mevlh F 6: 18.4056 18( 11) F-x(0,2)-P-x(3)-M-x(1,2)-L-x-[AE] Occurences: 18(11) CRYL_RABIT : 233- 244: gmrya FigPletMh-LnA egmls ECHA_HUMAN : 500- 510: igmhy Fs-PvdkMq-LlE iitte ECHP_HUMAN : 432- 443: vigth FfsPahvMk-LlE vipsq ECHP_HUMAN : 433- 443: igthf Fs-PahvMk-LlE vipsq ECHP_RAT : 431- 442: vigth FfsPahvMr-LlE vipsr ECHP_RAT : 432- 442: igthf Fs-PahvMr-LlE vipsr FADB_ECOLI : 451- 462: fcgmh FfnPvhrMp-LvE iirge FADB_ECOLI : 452- 462: cgmhf Fn-PvhrMp-LvE iirge FAOB_PSEFR : 452- 463: fvgmh FfnPvhmMp-LvE virge FAOB_PSEFR : 453- 463: vgmhf Fn-PvhmMp-LvE virge HBD_CLODI : 138- 149: vigmh FfnPvpmMk-LvE visgq HBD_CLODI : 139- 149: igmhf Fn-PvpmMk-LvE visgq HCD1_CAEEL : 154- 165: fgglh FfnPvpvMk-LlE virsd HCD1_CAEEL : 155- 165: gglhf Fn-PvpvMk-LlE virsd HCD2_CAEEL : 166- 177: fgglh FfnPvpmMk-LlE vvrht HCD2_CAEEL : 167- 177: gglhf Fn-PvpmMk-LlE vvrht HCDH_PIG : 280- 291: sqnpl Fq-PspaMnkLvA enkfg MMGB_BACSU : 141- 152: vigmh FmnPvpvMk-LvE virgl G 7: 17.3032 11( 11) P-x(2)-L-x(0,1)-D-x-[ILV]-x(2)-[DGS] Occurences: 11(11) CRYL_RABIT : 216- 225: egivs PsdL-DlVmsD glgmr ECHA_HUMAN : 568- 577: qegvd PkkL-DsLttS fgfpv ECHP_HUMAN : 145- 154: rltgv PaaL-DlItsG rrila ECHP_RAT : 144- 153: rvvgv PvaL-DlItsG kylsa FADB_ECOLI : 537- 547: gwpmg PayLlDvVgiD tahha FAOB_PSEFR : 537- 547: gwpmg PayLmDvVgiD tghhg HBD_CLODI : 225- 235: nhpmg PlaLgDlIglD vvlai HCD1_CAEEL : 241- 251: ghpmg PfeLaDyIglD tvkfv HCD2_CAEEL : 253- 263: gypmg PfeLsDyVglD tckfi HCDH_PIG : 251- 261: gypmg PfeLlDyVglD ttkfi MMGB_BACSU : 228- 238: nhpmg PlaLaDfIglD tclsi H 8: 16.2390 13( 11) L-V-x(0,1)-E-[AGV]-x(2)-[ADEGST] Occurences: 13(11) CRYL_RABIT : 208- 215: seawr LVeEGivS psdld ECHA_HUMAN : 587- 594: vgaat LVdEVgvD vakhv ECHP_HUMAN : 376- 383: lggvd LViEAvfE emslk ECHP_RAT : 375- 382: lstvd LVvEAvfE dmnlk FADB_ECOLI : 193- 199: vkaek LV-EGakA vlrqa FAOB_PSEFR : 396- 403: fgnvd LVvEAvvE npkvk FAOB_PSEFR : 461- 467: vhmmp LV-EVirG ekssd HBD_CLODI : 147- 153: vpmmk LV-EVisG qltsk HCD1_CAEEL : 279- 286: plvdk LVaEGklG rktgd HCD2_CAEEL : 110- 117: vkdad LViEAivE nidik HCDH_PIG : 103- 110: vhstd LVvEAivE qlkvv HCDH_PIG : 173- 179: vplmk LV-EVvkT pmtsq MMGB_BACSU : 150- 156: vpvmk LV-EVirG latse I 9: 15.6802 11( 11) G-F-x(0,1)-V-x(3,4)-L Occurences: 11(11) CRYL_RABIT : 191- 197: lkeid GF-Vlnr-L qyaii ECHA_HUMAN : 579- 587: lttsf GFpVgaatL vdevg ECHP_HUMAN : 477- 484: vgncf GF-VgnrmL npyyn ECHP_RAT : 476- 483: vgncy GF-VgnrmL apyyn FADB_ECOLI : 496- 503: vndcp GFfVnrv-L fpyfa FAOB_PSEFR : 497- 504: vndcp GFlVnrv-L fpyfg HBD_CLODI : 183- 190: vsesp GFvVnri-L ipmin HBD_CLODI : 183- 190: vsesp GF-VvnriL ipmin HCD1_CAEEL : 199- 206: ckdsp GFiVnrl-L ipyff HCD2_CAEEL : 211- 218: ckdtp GFiVnrl-L vpymf HCDH_PIG : 209- 216: ckdtp GFiVnrl-L vpyli MMGB_BACSU : 186- 193: vndfp GF-VsnrvL lpmin J 10: 15.6802 11( 11) P-x(3)-M-x(1,2)-L-x(1,2)-E Occurences: 11(11) CRYL_RABIT : 236- 245: yafig PletMh-LnaE gmlsy ECHA_HUMAN : 502- 510: mhyfs PvdkMq-Ll-E iitte ECHP_HUMAN : 435- 443: thffs PahvMk-Ll-E vipsq ECHP_RAT : 434- 442: thffs PahvMr-Ll-E vipsr FADB_ECOLI : 454- 462: mhffn PvhrMp-Lv-E iirge FAOB_PSEFR : 455- 463: mhffn PvhmMp-Lv-E virge HBD_CLODI : 141- 149: mhffn PvpmMk-Lv-E visgq HCD1_CAEEL : 157- 165: lhffn PvpvMk-Ll-E virsd HCD2_CAEEL : 169- 177: lhffn PvpmMk-Ll-E vvrht HCDH_PIG : 282- 292: nplfq PspaMnkLvaE nkfgk MMGB_BACSU : 144- 152: mhfmn PvpvMk-Lv-E virgl K 11: 15.2045 11( 11) F-x(2)-[NT]-R-x(0,1)-L Occurences: 11(11) CRYL_RABIT : 192- 197: keidg FvlNR-L qyaii ECHA_HUMAN : 545- 551: kdgpg FytTRcL apmms ECHP_HUMAN : 478- 484: gncfg FvgNRmL npyyn ECHP_RAT : 477- 483: gncyg FvgNRmL apyyn FADB_ECOLI : 497- 503: ndcpg FfvNRvL fpyfa FAOB_PSEFR : 498- 504: ndcpg FlvNRvL fpyfg HBD_CLODI : 184- 190: sespg FvvNRiL ipmin HCD1_CAEEL : 200- 205: kdspg FivNR-L lipyf HCD1_CAEEL : 200- 206: kdspg FivNRlL ipyff HCD2_CAEEL : 212- 217: kdtpg FivNR-L lvpym HCD2_CAEEL : 212- 218: kdtpg FivNRlL vpymf HCDH_PIG : 210- 215: kdtpg FivNR-L lvpyl HCDH_PIG : 210- 216: kdtpg FivNRlL vpyli MMGB_BACSU : 187- 193: ndfpg FvsNRvL lpmin L 12: 14.2494 12( 11) L-x-E-x(0,1)-V-[AIPV] Occurences: 12(11) CRYL_RABIT : 154- 159: pyyip LvElVP hpets ECHA_HUMAN : 240- 244: rtiey LeE-VA itfak ECHP_HUMAN : 441- 445: ahvmk LlE-VI psqys ECHP_RAT : 440- 444: ahvmr LlE-VI psrys FADB_ECOLI : 696- 700: qhlgp LyE-VP eglrn FAOB_PSEFR : 461- 465: vhmmp LvE-VI rgeks HBD_CLODI : 147- 151: vpmmk LvE-VI sgqlt HCD1_CAEEL : 135- 140: ntssf LlEdVA kglqd HCD1_CAEEL : 163- 167: vpvmk LlE-VI rsddt HCD2_CAEEL : 175- 179: vpmmk LlE-VV rhtet HCDH_PIG : 173- 177: vplmk LvE-VV ktpmt MMGB_BACSU : 150- 154: vpvmk LvE-VI rglat M 13: 13.8888 14( 11) P-x(2)-[AGLPV]-x(2)-L-x(4,5)-G Occurences: 14(11) CRYL_RABIT : 3- 14: as PaaGdvLivgs-G lvgrs ECHA_HUMAN : 568- 579: qegvd PkkLdsLttsf-G fpvga ECHA_HUMAN : 581- 592: tsfgf PvgAatLvdev-G vdvak ECHP_HUMAN : 517- 529: gfkmg PfrVsdLagldvG wksrk ECHP_RAT : 516- 528: gfkmg PfrVsdLagldvG wkirk FADB_ECOLI : 313- 325: kdvet PkqAavLgagimG ggiay FADB_ECOLI : 534- 545: kqfgw PmgPayLldvv-G idtah FAOB_PSEFR : 534- 545: ekfgw PmgPayLmdvv-G idtgh HBD_CLODI : 222- 233: lganh PmgPlaLgdli-G ldvvl HCD1_CAEEL : 238- 249: lgagh PmgPfeLadyi-G ldtvk HCD2_CAEEL : 250- 261: lgagy PmgPfeLsdyv-G ldtck HCDH_PIG : 248- 259: lgagy PmgPfeLldyv-G ldttk MMGB_BACSU : 144- 156: mhfmn PvpVmkLvevirG latse MMGB_BACSU : 225- 236: lgmnh PmgPlaLadfi-G ldtcl N 14: 13.4454 13( 11) P-x(2,3)-L-x(4)-G-x(3)-[ACGNSTV] Occurences: 13(11) CRYL_RABIT : 182- 195: kigqs PvrvLkeidGfvlN rlqya ECHA_HUMAN : 172- 185: tvlgt PevlLgalpGaggT qrlpk ECHP_HUMAN : 122- 135: aqvgl PevtLgllpGargT qllpr ECHP_RAT : 121- 134: arvgl PevtLgilpGargT qllpr FADB_ECOLI : 138- 151: lrigl PetkLgimpGfggS vrmpr FADB_ECOLI : 537- 549: gwpmg Pay-LldvvGidtA hhaqa FAOB_PSEFR : 139- 152: akigl PevkLgiypGfggT vrlpr FAOB_PSEFR : 537- 549: gwpmg Pay-LmdvvGidtG hhgrd HBD_CLODI : 225- 237: nhpmg Pla-LgdliGldvV laimn HCD1_CAEEL : 241- 253: ghpmg Pfe-LadyiGldtV kfvmd HCD2_CAEEL : 253- 265: gypmg Pfe-LsdyvGldtC kfimd HCDH_PIG : 251- 263: gypmg Pfe-LldyvGldtT kfiid MMGB_BACSU : 228- 240: nhpmg Pla-LadfiGldtC lsime O 15: 12.0102 11( 11) G-x-K-x(4,5)-F Occurences: 11(11) CRYL_RABIT : 257- 265: dryse GmKrvlksF gsipe ECHA_HUMAN : 629- 636: skgfl GrKsgkg-F yiyqe ECHP_HUMAN : 247- 255: ypyev GiKkeeelF lyllq ECHP_RAT : 246- 254: hpyev GiKeeeklF mylra FADB_ECOLI : 582- 589: danrf GqKnglg-F wryke FAOB_PSEFR : 582- 589: eakrl GqKngkg-F yayea HBD_CLODI : 269- 276: ranql GrKtkig-F ydynk HCD1_CAEEL : 286- 293: aegkl GrKtgdg-F ysykk HCD2_CAEEL : 298- 305: dsgkn GrKsgeg-F ykyk HCDH_PIG : 296- 303: aenkf GkKtgeg-F ykyk MMGB_BACSU : 272- 279: kagwl GkKsgrg-F ydyee P 16: 12.0102 27( 11) A-x(3,4)-G-x(5)-G Occurences: 27(11) CRYL_RABIT : 1- 12: AspaaGdvlivG sglvg ECHA_HUMAN : 139- 149: tkpiv Aain-GscvggG levai ECHA_HUMAN : 698- 709: isatp AegdiGavfglG fppcl ECHA_HUMAN : 704- 715: egdig AvfglGfppclG gpfrf ECHP_HUMAN : 91- 101: ekpvv Aaiq-GmafggG lelal ECHP_HUMAN : 97- 107: aiqgm Afgg-GlelalG chyri ECHP_HUMAN : 524- 535: rvsdl AgldvGwksrkG qgltg ECHP_RAT : 90- 100: qkpvl Aaiq-GvalggG lelal ECHP_RAT : 96- 106: aiqgv Algg-GlelalG chyri ECHP_RAT : 523- 534: rvsdl AgldvGwkirkG qgltg ECHP_RAT : 566- 576: dmlce Agrf-GqktgkG wyqyd FADB_ECOLI : 107- 117: pvpti Aavn-GyalggG cecvl FADB_ECOLI : 316- 326: etpkq Aavl-GagimgG giayq FADB_ECOLI : 578- 588: dalfd Anrf-GqknglG fwryk FAOB_PSEFR : 51- 61: aikad Asvk-GvivssG kdvfi FAOB_PSEFR : 108- 118: nvptv Aain-GialggG lemcl FAOB_PSEFR : 317- 327: kdvkq Aavl-GagimgG giayq FAOB_PSEFR : 578- 588: dalye Akrl-GqkngkG fyaye FAOB_PSEFR : 652- 663: iveta AeadmGlvygiG fplfr HBD_CLODI : 214- 224: eeide Amkl-GanhpmG plalg HBD_CLODI : 265- 275: akmvr Anql-GrktkiG fydyn HCD1_CAEEL : 230- 240: tdide Amkl-GaghpmG pfela HCD1_CAEEL : 281- 292: vdklv AegklGrktgdG fysyk HCD2_CAEEL : 242- 252: edidv Amkl-GagypmG pfels HCDH_PIG : 240- 250: edidt Amkl-GagypmG pfell HCDH_PIG : 291- 302: mnklv AenkfGkktgeG fykyk MMGB_BACSU : 268- 278: rkyvk Agwl-GkksgrG fydye Q 17: 12.0102 12( 11) L-x(3,4)-G-x(3)-V Occurences: 12(11) CRYL_RABIT : 23- 31: rswam Lfas-GgfrV klydi CRYL_RABIT : 174- 183: drtha LmrkiGqspV rvlke ECHA_HUMAN : 371- 379: ilgag Lmga-GiaqV svdkg ECHP_HUMAN : 304- 312: vgvvg Lgtm-GrgiV isfar ECHP_RAT : 460- 469: atvms LskkiGkigV vvgnc FADB_ECOLI : 385- 393: tihpt Ldya-GfdrV divve FAOB_PSEFR : 514- 522: ggfak Lvsa-GvdfV ridkv HBD_CLODI : 228- 237: mgpla LgdliGldvV laimn HCD1_CAEEL : 244- 253: mgpfe LadyiGldtV kfvmd HCD2_CAEEL : 32- 40: iigag Lmgs-GiaqV sanak HCDH_PIG : 25- 33: viggg Lmga-GiaqV aaatg MMGB_BACSU : 170- 179: ldvma LaekmGktaV evndf R 18: 12.0102 19( 11) A-x(1,2)-K-x-G Occurences: 19(11) CRYL_RABIT : 282- 287: ekvnq AmcKkG padpe ECHA_HUMAN : 212- 216: iradr Ak-KmG lvdql ECHP_HUMAN : 162- 166: ilade Al-KlG ildkv ECHP_HUMAN : 549- 553: lpgtp Ar-KrG nrryc ECHP_HUMAN : 656- 661: hgygc ArhKgG pmfya ECHP_RAT : 396- 401: faels AlcKpG aflct FADB_ECOLI : 178- 182: vgadq Al-KiG lvdgv FADB_ECOLI : 481- 485: kvvaw As-KmG ktpiv FAOB_PSEFR : 191- 195: davvt Ad-KlG aaald FAOB_PSEFR : 482- 486: ttvay Ak-KmG knpiv FAOB_PSEFR : 594- 598: fyaye Ad-KkG kqkkl HBD_CLODI : 214- 218: eeide Am-KlG anhpm HCD1_CAEEL : 230- 234: tdide Am-KlG aghpm HCD1_CAEEL : 281- 286: vdklv AegKlG rktgd HCD2_CAEEL : 242- 246: edidv Am-KlG agypm HCDH_PIG : 52- 57: tedil AksKkG ieesl HCDH_PIG : 240- 244: edidt Am-KlG agypm HCDH_PIG : 291- 296: mnklv AenKfG kktge MMGB_BACSU : 171- 175: dvmal Ae-KmG ktave S 19: 12.0102 14( 11) G-x(2,3)-A-x(3)-A Occurences: 14(11) CRYL_RABIT : 17- 25: gsglv GrswAmlfA sggfr ECHA_HUMAN : 592- 600: lvdev GvdvAkhvA edlgk ECHP_HUMAN : 262- 270: yllqs GqarAlqyA ffaer ECHP_RAT : 261- 269: ylras GqakAlqyA ffaek ECHP_RAT : 307- 315: glgtm GrgiAisfA rvgis FADB_ECOLI : 325- 333: gagim GggiAyqsA wkgvp FADB_ECOLI : 326- 333: agimg Ggi-AyqsA wkgvp FAOB_PSEFR : 326- 334: gagim GggiAyqsA skgtp FAOB_PSEFR : 327- 334: agimg Ggi-AyqsA skgtp HBD_CLODI : 199- 206: ineav Giy-AdgvA skeei HCD1_CAEEL : 23- 31: gsgqm GsgiAqvtA ssgfn HCD2_CAEEL : 34- 42: gaglm GsgiAqvsA nakln HCDH_PIG : 27- 35: ggglm GagiAqvaA atght MMGB_BACSU : 15- 23: gagqm GsgiAqtaA dagfy T 20: 12.0102 13( 11) F-x(3)-R-x(0,1)-L Occurences: 13(11) CRYL_RABIT : 192- 197: keidg FvlnR-L qyaii ECHA_HUMAN : 13- 19: gilsr FsafRiL rsrgy ECHA_HUMAN : 545- 551: kdgpg FyttRcL apmms ECHP_HUMAN : 478- 484: gncfg FvgnRmL npyyn ECHP_RAT : 477- 483: gncyg FvgnRmL apyyn FADB_ECOLI : 497- 503: ndcpg FfvnRvL fpyfa FAOB_PSEFR : 498- 504: ndcpg FlvnRvL fpyfg HBD_CLODI : 184- 190: sespg FvvnRiL ipmin HCD1_CAEEL : 200- 205: kdspg FivnR-L lipyf HCD1_CAEEL : 200- 206: kdspg FivnRlL ipyff HCD2_CAEEL : 212- 217: kdtpg FivnR-L lvpym HCD2_CAEEL : 212- 218: kdtpg FivnRlL vpymf HCD2_CAEEL : 223- 228: lvpym FealR-L yergd HCDH_PIG : 210- 215: kdtpg FivnR-L lvpyl HCDH_PIG : 210- 216: kdtpg FivnRlL vpyli MMGB_BACSU : 187- 193: ndfpg FvsnRvL lpmin Number of patterns evaluated by Pratt:5200 Total running time: 6 seconds