MDL test case: Chromo shadow family, Z=4.0, Z'=50.0

.

  1. DmHP1_A DvHP1_A HuHP1_A MoMOD1_A MoMOD2_A PcHET1_A PcHET2_A 
    48.40548 129.61278 
E-x(0,1)-E-E-[FY]-x-V-E-K-[IV]-[IL]-D-[KR]-R-x(3,4)-G-x-V-x-Y-x-L-K-W-K-G-[FY]-x-[ED]-x-[HED]-N-T-W-E-P-x(2)-N-x-[ED]-C-x-[ED]-L-[IL]
  2. DmHP1_B DvHP1_B HuHP1_B MoMOD1_B MoMOD2_B PcHET1_B 
    29.51233 113.53698 
L-x(2,3)-E-[KR]-I-[IL]-G-A-[TS]-D-[TSN]-x-G-[EDR]-L-x-F-L-x(2)-[FW]-[KE]-x(2)-D-x-A-[ED]-x-V-x-[AS]-x(2)-A-x(2)-K-x-P-x(2)-[IV]-I-x-F-Y-E
  3. MoMOD3 HuMG44 CfTENV FoSKPY MoCHD1_A ScYEZ4_B Ce29H12 ScYEZ4_A 
    11.70191 35.90383 
Y-x(0,2)-L-[IV]-K-W-x(6)-[HE]-x-[TS]-W-E-x(4)-[IL]
  4. DmPc 
    ddpvdlvyaaekiiqkrvkkgvveyrvkwkgwnqryntwepevnildrrlidiyeqtnkssgtpsk
  5. CeYO82 
    madgselytvesilehrkkkgksefyikwlgydhthnswepkenivdptlieafftreaarkaeik
  6. SpSWI6_A 
    eeeeedeyvvekvlkhrmarkgggyeyllkwegyddpsdntwsseadcsgckqlieaywnehggrpepsk
  7. CeT9A58 
    egksdeifevekilahkvtdnllvlqvrwlgygadedtwepeedlqecasevvaeyykklkvtdktel
  8. DmSuv39 
    krppkgeyvveriecvemdqyqpvffvkwlgyhdsentweslanvadcaemekfverhqqlyetyia
  9. MoCHD1_B 
    ddlhkqyqiveriiahsnkqsaaglpdyyckwqglpysecswedgaliskkfqtcideyfsrnqskttpfk
  10. MgGRH 
    tgepeevwaveailaaknrrgrgggrqvlvkwqgydnptweplelmtdtraldefearwggvhtndg
  11. MgMAGGY 
    evegereyeveeildsfwetrgrggrrlkyivrwagysepttepadylenaaqlvknfhrryphkpgprp
  12. PcHET2_B 
    vsdfdryvpseilgvtkvggslkflmkwegieratfvlakeanivcpqlvidyyesrlqlfdpkm
  13. SpSWI6_B 
    vkqvenydswedlvssidtierkddgtleiyltwkngaishhpstitnkkcpqkmlqfyeshltfrene
And with the bigger sequence segment set:
  1. DmHP1_A DvHP1_A HuHP1_A MoMOD1_A MoMOD2_A PcHET1_A PcHET2_A 
    48.40548 129.61278 
E-x(0,1)-E-E-[FY]-x-V-E-K-[IV]-[IL]-D-[KR]-R-x(3,4)-G-x-V-x-Y-x-L-K-W-K-G-[FY]-x-[ED]-x-[HED]-N-T-W-E-P-x(2)-N-x-[ED]-C-x-[ED]-L-[IL]
  2. DmHP1_B DvHP1_B HuHP1_B MoMOD1_B MoMOD2_B PcHET1_B 
    29.51233 113.53698 
L-x(2,3)-E-[KR]-I-[IL]-G-A-[TS]-D-[TSN]-x-G-[EDR]-L-x-F-L-x(2)-[FW]-[KE]-x(2)-D-x-A-[ED]-x-V-x-[AS]-x(2)-A-x(2)-K-x-P-x(2)-[IV]-I-x-F-Y-E
  3. DmPc MoMOD3 CeYO82 SmPAJ26 Pf0131C CeT9A58 DmSuv39 HuMG44 CfTENV MoCHD1_A CeYK9A3 Ce29H12 
    14.54152 28.06227 
W-x-G-[YW]-x(5)-[TS]-W-E-x(3)-[TSDN]-[ILV]
  4. SpSWI6_A 
    eeeeedeyvvekvlkhrmarkgggyeyllkwegyddpsdntwsseadcsgckqlieaywnehggrpepsk
  5. FoSKPY 
    eisgpevyeaeairdtrkingqreylikwknypenentweppkhlvnaqrllkdfhqrarkkerrpk
  6. ScYEZ4_A 
    ktsleegkvlektvpdlnnckenyeflikwtdeshlhntwetyesigqvrglkrldnyckqfiiedqqvr
  7. MoCHD1_B 
    ddlhkqyqiveriiahsnkqsaaglpdyyckwqglpysecswedgaliskkfqtcideyfsrnqskttpfk
  8. ScYEZ4_B 
    ldefeefhvperiidsqrasledgtsqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqy
  9. MgGRH 
    tgepeevwaveailaaknrrgrgggrqvlvkwqgydnptweplelmtdtraldefearwggvhtndg
  10. MgMAGGY 
    evegereyeveeildsfwetrgrggrrlkyivrwagysepttepadylenaaqlvknfhrryphkpgprp
  11. PcHET2_B 
    vsdfdryvpseilgvtkvggslkflmkwegieratfvlakeanivcpqlvidyyesrlqlfdpkm
  12. SpSWI6_B 
    vkqvenydswedlvssidtierkddgtleiyltwkngaishhpstitnkkcpqkmlqfyeshltfrene
Gap penalty used: c=1.0

Page compiled by: Inge Jonassen.

Chromo Test Set MDL.