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Julius Parulek
  

Post-Doc in Visualization

(Post doktor i Visualisering)
 
Email: Julius.Parulek@uib.no
Phone: +47/55584166
Office: room 3134 (HiB, data block)




Short Biography

Julius Parulek is a Post-Doc fellow in Visualization Group at Department of Informatics in University of Bergen, Norway. He recieved his MSc. in 2003 and his PhD study in 2008, in the area of computer science at the faculty of Mathematics, Physics and Informatics, Department of Applied Informatics, Comenius University, Bratislava.

His reasearch mainly focuses on the visualization in biology (interactive 3D visaulization integrated with visual analytics). Additionally, he has special interests in 3D geometrical modeling and visualization of Implicit Surfaces. Other topics cover image processing and computer vision. CV

Teaching

Seminar in Visualization (INF358)
Teaching Assistant, Fall 2010
Teaching Assistant, Fall 2011
Teaching Assistant, Fall 2012
Selected Topics in Visualization (INF359)
Teaching Assistant, Spring 2010
Teaching Assistant, Spring 2011
Lecturer, Spring 2012
Lecturer, Spring 2013

Students


Deformations of skeleton based implicit objects.
Sondre Langeland Hisdal
GPU-Based Visualization of Convolution Surfaces
Sondre Langeland Hisdal
 

Publications

   

Illustrative Visualization of Molecular Reactions using Omniscient Intelligence and Passive Agents
M.L. Muzic, J. Parulek, A.K. Stavrum, and I. Viola Computer Graphics Forum, 2014, Vol. 33(3), pp. 141-150, EuroVis 2014

   

Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization
J. Parulek, D. Jonsson, T. Ropinski, S. Bruckner, A. Ynnerman and I. Viola Computer Graphics Forum, 2014, To Appear

   

Rapid Modelling of Interactive Geological Illustrations with Faults and Compaction
by M. Natali, J. Parulek and D. Patel Spring Conference on Computer Graphics (SCCG 2014) , 2014,

   

Fast Blending Scheme for Molecular Surface Representation
by J. Parulek, A. Brambilla. Visualization and Computer Graphics, IEEE Transactions on, pp. 2653 - 2662, 2013.

   

Visual Cavity Analysis in Molecular Simulations
by J. Parulek, C. Turkay, N. Reuter, I. Viola. BMC Bioinformatics, pp. S4, 2013.

   

Modeling Terrains and Subsurface Geology
by M. Natali, E. M. Lidal, J. Parulek, I. Viola and D. Patel EuroGraphics 2013 State of the Art Reports (STARs), pp.155–173, 2013

   

Seamless Abstraction of Molecular Surfaces
by J. Parulek, T. Ropinski, I. Viola. Spring Conference on Computer Graphics (SCCG 2013) , 2013, pp. 120-127 -- the 2nd best paper

   

Implicit Surfaces for Interactive Graph Based Cavity Analysis of Molecular Simulations
by J. Parulek, C. Turkay, N. Reuter, I. Viola. Biological Data Visualization (BioVis), 2012 IEEE Symposium on, pp.115-122, 2012.

   

Dual analysis of DNA microarrays
by C. Turkay, J. Parulek, H. Hauser. In Proceedings of 12th International Conference on Knowledge Management and Knowledge Technologies, I-KNOW '12, 2012.
Implicit Representation of Molecular Surfaces
by Julius Parulek and Ivan Viola Proceedings of the IEEE Pacific Visualization Symposium, pp. 217-224, 2012

   

   

Interactive Visual Analysis of Temporal Cluster Structures
by C. Turkay, J. Parulek, N. Reuter, H. Hauser. Computer Graphics Forum, 2011, Vol. 30(3), pp. 711-720, EuroVis 2011

   

   

Integrating Cluster Formation and Cluster Evaluation in Interactive Visual Analysis
by C. Turkay, J. Parulek, N. Reuter, H. Hauser. Spring Conference on Computer Graphics (SCCG 2011) , 2011, pp. 107-114 -- Second best paper

 

Other Publications

Cell Architecture Modeling System Based on Quantitative Ultrastructural Characteristics
by Július Parulek, Miloš Šrámek, Michal Cervenanský, Marta Novotová and Ivan Zahradník. in the book on "Systems Biology", by Humana Press, Springer Verlag, Series: Methods in Molecular Biology, 2009, Vol. 502, pp. 289–313
GeomCell, Design of Cell Geometry
by Július Parulek, Miloš Šrámek, Ivan Zahradník. in the book on “Recent Advances in the 3D Physiological Human”, by Springer Verlag, Volume. 2009, pp. 21-36
Heterogeneous Modeling of Biological Organs and Organ Growth
by R. Durikovic, S. Czanner, J. Parulek, and M. Sramek. in the book on "Heterogeneous objects modeling and applications", by Springer Verlag, Series: Lecture Notes in Computer Science , Vol. 4889, 2008, pp. 239–258
Grid Problem Solving Environment for Stereology Based Modeling
by Július Parulek, Marek Ciglan, Branislav Šimon, Miloš Šrámek, Ladislav Hluchý, Ivan Zahradník. International Conference on Grid computing, high-performAnce and Distributed Applications, by Springer Verlag, Series: Lecture Notes in Computer Science , Vol. 4804, 2007, pp. 1417–1434
Implicit modeling by metamorphosis of 2d shapes
by Július Parulek, Miloš Šrámek. In SCCG ’07: Proceedings of the 23nd spring conference on Computer graphics, April 2007, pp. 227–234
XISL—a development tool for construction of implicit surfaces
by • Július Parulek, Pavol Novotný, Miloš Šrámek. . In SCCG ’06: Proceedings of the 22nd spring conference on Computer graphics, April 2006, 128–135

Mailing address: Dep. of Informatics, Univ. of Bergen, Postboks 7803, N-5020 Bergen, Norway ("c/o <addressee>");
Visiting address: Etasje 3, data blokk, Hřyteknologisenteret, Thormřhlensgate 55, Bergen, Norway;
FAX (for all team members): +47 - 55 58 41 99 (please indicate addressee with a "c/o ..." phrase).





 Last change: Julius Parulek, 2013-06-14