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PhysioIllustration

The focus of the project is is to develop novel graphics data representations, visual representations, occlusion handling, visual guidance and storytel-ling, zooming, interaction and integration of physiological models and medical imaging. The visualization technology will be developed and evaluated on multiple scale levels, from molecular machines, up to the organ level.

Interactive molecular illustration

Physiological processes are of the temporal and spatial multi-scale and ranges from molecular level to the whole organism. Many of the processes have their begining in the molecular scale. Important processes such as polymerization, diffusion, reactions are all happening in the crowded environment full of different molecules. Also those processes have vast temporal range from nanoseconds (diffusion) to seconds (polymerization). Our first focus is therefore on the illustrative visualization of physiological processes in the molecular scale to provide intuitive visual representation, which the user can observe and interact with. Read more ...

Research Staff

Helwig Hauser

Professor

Ivan Viola

Associate Professor

Stefan Bruckner

Professor

Julius Parulek

Post Doctor

Ivan Kolesar

Ph.D. Student

Pina Kingman

Illustrator

Mathieu Le Music

Ph.D. Student, TU Wien

Manuela Waldner

Post Doctor, TU Wien

Publications 2014

Illustrating Polymerization using Three-level Model Fusion

Ivan Kolesar, Julius Parulek, Ivan Viola, Stefan Bruckner , Anne-Kristin Stavrum, Helwig Hauser

In Proceedings of IEEE BioVis 2014

Illustrative Visualization of Molecular Reactions using Omniscient Intelligence and Passive Agents

Mathieu Le Muzic, Julius Parulek, Anne-Kristin Stavrum , Ivan Viola

Journal Article, Computer Graphics Forum

Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization

Julius Parulek, Daniel Jönsson, Timo Ropinski, Stefan Bruckner , Anders Ynnerman, Ivan Viola

Journal Article, Computer Graphics Forum

Our Resilient Genome: The Making of a Science Film

Pina Kingman

Presentation in the EG VCBM workshop 2014

Our Resilient Genome

Pina Kingman

Talk in the Forshkningsdagene UNG 2014

Integrating 2D and 3D Animation to Comprehensively Communicate Biology

Pina Kingman, Anne-Kristin Stavrum, Ivan Viola, Helwig Hauser

Poster presented at the VizBi conference 2014

PARP-1 Binds Damaged DNA

Pina Kingman, Anne-Kristin Stavrum, Ivan Viola, Helwig Hauser

Poster presented at the VizBi conference 2014

Illustrative Visualization of Biochemical Processes Featuring Multiple Temporal Scales

Mathieu Le Muzic, Julius Parulek, Manuela Waldner, Ivan Viola

Poster presented at the EG VCBM workshop 2014

Interactively illustrating polymerization using three-level model fusion

Ivan Kolesar, Julius Parulek, Ivan Viola, Stefan Bruckner, Anne-Kristin Stavrum, Helwig Hauser

Journal Article, BMC Bioinformatics 2014

Publications 2013

Importance Driven Visualization of Molecular Surfaces

Julius Parulek, Timo Ropinski, Ivan Viola

Poster presented at the BioVis conference 2013

Visual cavity analysis in molecular simulations

Julius Parulek, Cagatay Turkay, Nathalie Reuter, Ivan Viola

Journal Article, BMC Bioinformatics

Fast Blending Scheme for Molecular Surface Representation

Julius Parulek, Andrea Brambilla

Journal Article, Visualization and Computer Graphics, IEEE Transactions on

Seamless Abstraction of Molecular Surfaces

Julius Parulek, Timo Ropinski, Ivan Viola

In Proceedings of the 29th Spring Conference on Computer Graphics

Approaches for Visualizing Human Physiology

Ivan Kolesar

Presentation in the VisBio 2013

Animating Biology: The making of a science film

Pina Kingman

Presentation in the VisBio 2013

Publications 2012

Implicit Surfaces for Interactive Graph Based Cavity Analysis of Molecular Simulations

Julius Parulek, Cagatay Turkay, Natalie Reuter, Ivan Viola

In 2nd IEEE Symposium on Biological Data Visualization

Implicit Representation of Molecular Surfaces

Julius Parulek, Ivan Viola

In Proceedings of the IEEE Pacific Visualization Symposium (PacificVis 2012)

Illustrative Visualization of Physiological Models and Imaging

Ivan Viola

Talk in the MedViz Conference 2012






 Last Modified: MR. X, 2014-11-03